| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1728 |
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| Symbol | rumA |
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| ID | 6176551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 1931211 |
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| End bp | 1932665 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641681487 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001808429 |
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| Protein GI | 172060777 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.171324 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.164124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGCTA TCGTCGTCTA CAATCTCGCC TTCTTCAACG TTTGTCAGGA AAAGCTGGTG
TCCGAAGCCG TCCCCACTTC TGCGCGCAAA TCGAAAAATG CGCCCGTCGC GCCCGGGCCT
GCCCCGGTTC TCGAGATCGA ATCGCTCGAC ATGGAAGCGC GCGGTGTCGG CCGCACGGTG
ACCGAGGACG GCACGCCGGG CAAGGTCATC TTCGTCGAAG GCGCGCTGCC CGGCGAGCGC
GTGACCTATT CGAGCTACCG TCGCAAGCCG AGCTACGAGC AGGCGACCGT GGTCGACATC
CTGCGCCCGA GCGTGCTGCG CACGCAGCCG AAATGCGCGT TCTTCGGCAC CTGCGGCGGC
TGCTCGATGC AGCACCTCGA CATGCGCGCC CAGGTGGCGA TCAAGCAGCG CGTGCTCGAG
GACAACCTGT GGCATCTGGC GAAGCTGCGT GCCGAGACGA TGTTCGCGCC GATCCATGGC
CCGTCGTGGG GCTACCGCTA CCGTGCGCGC CTGACTGTGC GCAACGTCGC GAAGAAGGGC
GGCGTGCTGG TCGGCTTCCA CGAAAAGAAG AGCAGCTATG TCGCCGACAT GACGAGCTGC
GAAGTGCTGC CGCCGCACGT GTCCGCAATG CTCGTGCCGC TGCGCCGGCT GGTCGAGGGG
CTGTCGATTC GCGACCGGAT GCCGCAGATC GAACTCGCGG TCGGTTCGCA AGTCACCGCG
CTGGTGCTGC GCGTGCTGGA GCCGATCAAT GCGGACGACG AAGCGCTGCT GCGCGCGTTC
GCGGACGAGC ACAAGGTGCA GTTCTGGCTG CAGCCGAAGG GCCCGGACAC GGTGACGCCG
TTCTATCCGC TCGACGTGCC GCTCGACTAC ACGCTGCCGG AGTTCGGCAT CCGCATGCCG
TTCAAGCCGA CCGACTTCAC GCAGGTCAAC CATCAGATCA ACCGCGTGCT GGTGGGCCGC
GCGCTGCGCC TGCTCGCGCC GTCGCGCGAC GATCGCGTGC TCGACCTGTT CTGCGGGATC
GGCAACTTCA CGCTGCCGCT CGCGCGACTG TCGCGCGAGG TGATGGGCAT CGAGGGCAGC
GACACGCTGA CGACGCGCGC GCTGGCGAAT GCGCGCGAAA ACGGCGTCGA TGGCCACACG
ACGTTCGCGT GCCGGAACCT GTTCGAAGTG ACGGGCGACG ACCTCCGTGC GCTCGGCGCC
TTCGACAAGT TCCTGATCGA CCCGCCGCGC GAAGGCGCGC TTGCGGTGTC GAAGGCGCTG
GCCGAAATCG CGCAGAGCGG CGCAGGCCCG CTGCCGAAGC GGATCGTCTA CGTGTCGTGC
AACCCGTCGA CGCTCGCGCG TGACGCTGGC CTCCTCGTGC ACGAGGCGGG TTACCGCCTG
AAGGGCGCCG GGGTCGTGAA CATGTTCCCG AATACGTCGC ACGTCGAATC GATCGCGCTG
TTCGAGCGCG ACTGA
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| Protein sequence | MRAIVVYNLA FFNVCQEKLV SEAVPTSARK SKNAPVAPGP APVLEIESLD MEARGVGRTV
TEDGTPGKVI FVEGALPGER VTYSSYRRKP SYEQATVVDI LRPSVLRTQP KCAFFGTCGG
CSMQHLDMRA QVAIKQRVLE DNLWHLAKLR AETMFAPIHG PSWGYRYRAR LTVRNVAKKG
GVLVGFHEKK SSYVADMTSC EVLPPHVSAM LVPLRRLVEG LSIRDRMPQI ELAVGSQVTA
LVLRVLEPIN ADDEALLRAF ADEHKVQFWL QPKGPDTVTP FYPLDVPLDY TLPEFGIRMP
FKPTDFTQVN HQINRVLVGR ALRLLAPSRD DRVLDLFCGI GNFTLPLARL SREVMGIEGS
DTLTTRALAN ARENGVDGHT TFACRNLFEV TGDDLRALGA FDKFLIDPPR EGALAVSKAL
AEIAQSGAGP LPKRIVYVSC NPSTLARDAG LLVHEAGYRL KGAGVVNMFP NTSHVESIAL
FERD
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