| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1724 |
|---|
| Symbol | |
|---|
| ID | 6178130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1927381 |
|---|
| End bp | 1928400 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641681483 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001808425 |
|---|
| Protein GI | 172060773 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1426] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.305446 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.344578 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGC CGCAGCCGAC AAACGGCGCA GAGACGGATG CCGCGAAGCC GGCACCGGCG
GGGTTGGAAA CGCTGACGGC CGTCGGCAGC CGGCTGGCGC ATCTCCGGGA GGCGAAGGGC
TGGACGGTCG ACGACGTGTC GGCGCGGCTC AAGGTCGCCC CGCAGAAGCT GCGTGCGCTC
GAGGCCGGCG ACATCAGCCA TTTGCCCGGC GTGACGTTCG CGCTCGGCGT CGTGCGCAGC
TACGCGAAGA TGCTCGGCGT CGATCCGGAG CCGTTTGCGC AGGCGTTGCG CCGCGAGCGC
GGCGTCCCGG AAGTCGATCT GTCGATGCCC GCGTCGTCGG GCACCGATCT GCCGCGCGGC
CGCGTGTCGA TTCCGCTCGG CGGCTCGTCG CGCCACCATC CGTGGCTGTG GGGGACGGCG
ATCGTCGTCG TCGCGGTGGT CGCGGTGCTC ATGTGGCACA CTGGCGGCGA TTCGTCGAGC
TGGCTCGCGC GTTTCAAGGG CGGCGACACC GACCATGCGT CGGCGGCCAG CGCGCCGGCG
GCGTCTTCGG TCGAAGAGGC CGCCGCGGGC GGCGCGTCGG CGGCAGCCGG CAGCGATGCG
CCGGCGCAGG TCGCGGCATC CGCCGTGGCG CCGCAGGTCG TTGCATCGGC AGCACCGGCT
GCACCGGCGC CGGCCCCAGC GGTCGCGGCG CCCGCGTCGC AATCGGTCGT GACGGCCGCG
GCGAGCGGCG CGGCCGTGCC GGCCCAGCCC GCGAGCGTCG TGGTGGCGGC AGGCCAGTCG
ATGATCGAAC TGAAGGTCAA GCAGGATTGC TGGTTCAGCG TGCGCGACAA GAACGGCAAG
GAGCTGTTCT CGGCGCTGGT GCGGGCCGGC GAGACGAAGC AGGTCGCCGG CGACGGACCG
TTCAAGGTCA CGATCGGCAA CAAGGCAGGC ATGGACGCGG TCGCGTTCGA CGGAAAACCT
GTCGATCCGG CAAAATATTC GGCAGCGCGG GGTAACGTGG CGCGGTTCAC GTTGCCCTGA
|
|---|
| Protein sequence | MSEPQPTNGA ETDAAKPAPA GLETLTAVGS RLAHLREAKG WTVDDVSARL KVAPQKLRAL
EAGDISHLPG VTFALGVVRS YAKMLGVDPE PFAQALRRER GVPEVDLSMP ASSGTDLPRG
RVSIPLGGSS RHHPWLWGTA IVVVAVVAVL MWHTGGDSSS WLARFKGGDT DHASAASAPA
ASSVEEAAAG GASAAAGSDA PAQVAASAVA PQVVASAAPA APAPAPAVAA PASQSVVTAA
ASGAAVPAQP ASVVVAAGQS MIELKVKQDC WFSVRDKNGK ELFSALVRAG ETKQVAGDGP
FKVTIGNKAG MDAVAFDGKP VDPAKYSAAR GNVARFTLP
|
|---|
| |