| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1718 |
|---|
| Symbol | hfq |
|---|
| ID | 6177182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1920759 |
|---|
| End bp | 1921001 |
|---|
| Gene Length | 243 bp |
|---|
| Protein Length | 80 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641681477 |
|---|
| Product | RNA-binding protein Hfq |
|---|
| Protein accession | YP_001808419 |
|---|
| Protein GI | 172060767 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1923] Uncharacterized host factor I protein |
|---|
| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.607958 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACA AAGGGCAATT GTTACAAGAC CCGTTTTTGA ACGCACTGCG CAAAGAGCAC
GTTCCCGTTT CGATCTATCT CGTCAACGGC ATCAAGCTCC AAGGGAACAT CGAATCGTTC
GACCAGTACG TCGTGTTGCT CCGTAATACG GTGACCCAGA TGGTCTACAA GCACGCCATC
TCGACGGTCG TGCCGGCGCG CCCGGTGAAT TTCCACCCGG ACGCGGAAGC GACCACGTCC
TAA
|
|---|
| Protein sequence | MSNKGQLLQD PFLNALRKEH VPVSIYLVNG IKLQGNIESF DQYVVLLRNT VTQMVYKHAI
STVVPARPVN FHPDAEATTS
|
|---|
| |