Gene BamMC406_1715 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_1715 
Symbol 
ID6177242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp1917188 
End bp1918087 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content67% 
IMG OID641681474 
ProductHflC protein 
Protein accessionYP_001808416 
Protein GI172060764 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01932] HflC protein 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.90323 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.244778 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGAA TCATTGCGCT CGTCGTCGCA ATCGTGATCG TCGCCTTCGC GGCATCGTCG 
ACCGTGCTGA CCGTCGATCC GCGCCACACG GCCGTGCTGT CGGGCCGCGA CGGCACGCAG
CCCGAACTCG CGGGCCCCGG CATCCATTTC AAGCTGCCGC CGCCGCTGCA GACGGCGACG
CTGATCGACA CGCGCCTGCA ATCGCTCGAA TCGCCGGATC CGCTGCAACT CGCGACCGAA
GACAAGCACG ATCTGCTCGT CACGTATGCG GTCAAGTACC GGATCAGCGA TCCGATGAAG
TACTTCACGG CGACGAGCGG CGACTCGGCC ACCGCCGCCG AGCGTCTGGC CGGCGCGCTG
AAGAGCGCGC TCGGTGACGC ATTCGGCAAG CGCGTGCTCG ACGACGCGCT CGGCGGACAG
CGCGACATCG CCAATGCGGC TCGCGATGCG GTGCGCGCGC AGGCATCCGG CTTCGGCGTC
GACGTGGTCG ATGTGCAGTT GACGCGCGTC GACTTGCCGG CCGCGCAGGC CGACGCCGTC
TATCAGCGGA TGATTGCCGC GCTGCGCGCG CAGGCCGCAC AGGTGCGCGC GGATGGCGCT
GCGGATGTCG AACAGATCAA GGCCGATGCG GAGCGCGAAC AGCAGGCGGT GCTCGCGAAT
GCGTACAAGT CCGCGCAGAC GATCAAGGGC GAGGGCGATG CGAAGGCCGC GTCGATCGCC
GCCGACGCGT TCGGCCAAGA TCCGCAGTTC TACCAGTTCT ACGCGAGCCT GCAGGCTTAC
CGGAATACCT TCAAGCGCAA CGACATCATC GTGGTCGATC CCGACAGCGA GTTTTTCCGT
TTCATGCGCA GCCCGACGGG CGGTGCCGCA CCGGCGGCAC CTGCTCCCCG CAAACACTGA
 
Protein sequence
MNRIIALVVA IVIVAFAASS TVLTVDPRHT AVLSGRDGTQ PELAGPGIHF KLPPPLQTAT 
LIDTRLQSLE SPDPLQLATE DKHDLLVTYA VKYRISDPMK YFTATSGDSA TAAERLAGAL
KSALGDAFGK RVLDDALGGQ RDIANAARDA VRAQASGFGV DVVDVQLTRV DLPAAQADAV
YQRMIAALRA QAAQVRADGA ADVEQIKADA EREQQAVLAN AYKSAQTIKG EGDAKAASIA
ADAFGQDPQF YQFYASLQAY RNTFKRNDII VVDPDSEFFR FMRSPTGGAA PAAPAPRKH