Gene BamMC406_1672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_1672 
Symbol 
ID6176457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp1872150 
End bp1873244 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content63% 
IMG OID641681433 
Productextracellular solute-binding protein 
Protein accessionYP_001808375 
Protein GI172060723 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0285778 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCAA AGGTAGTGGG CCGGTTCGCA GCGCTCGCGC TGTGCGTGGG TGCGTCGGCC 
GCAGCGGCGA AGGATACGCA GCTCAATATC TATAACTGGT CGGACTACAT TGCGAAGGAC
ACGATCCCGA ACTTCGAGAA GCAGACGGGC GTCAAGGTTC GCTACGACAA CTACGACAGC
GACGACACGC TGCAGGCTAA GCTGCTGACG GGCAGTTCGG GCTACGACAT CGTCGTGCCG
ACCAGCAACT ACGCGGGCAA GCAGATCGCG GCCGGCATCT TCACGCCGCT CGACAAGTCG
AAGCTGCCGA ACCTCAAGCA CCTCGATCCG CAACTGATGG CGCTCGTCGC CGGCGCCGAT
CCGGGCAACA AGTACACGGT GCCCTGGGCA TACGGCACGA CCGGTCTCGC CTACAACCTG
ACGAAGGCGC AGCAGGCGCT CGGCAAGGTC CCGCTCGACA ACTGGGACAT CCTGTTCAAG
CCGGAAAACA TCTCGAAGCT GAAGGCCTGC GGCGTGTCGG TGCTCGACGC ACCGGACCAG
ATGTTCGCCG CGGCGCTGCA CTACATCGGC AAGGATCCGA TGAGCACGAA CCCGGCCGAC
TACAAGGCCG CGATGGAAGT GCTGAAGAAG ATCCGCCCGT ACATCACGCA GTTCAACTCG
TCGGGCTACA TCAACGACCT GGTCGGCGGC GACATCTGCT TCGCGTACGG CTGGTCGGGC
GACGTCGTGA TCGCGAAGCA TCGCGCGATC GAAGCGAAGA AGCCGTACAA GGTCGAGTAC
TACATTCCGA AGGGCGGCGC ACCGGTCTGG TTCGACGTGA TGGCGATTCC GAAGGACGCG
AAGAACAAGG ACGCCGCGCT GCAGTGGATC AACTACATCG AGGATCCGAA GGTGCACGCG
GCGATCACGA ACGCCGTGTA CTACCCGAGC GCGAACGCCG AGGCCCGCAA GTACGTGCGG
CCGGACGTCG CGAACGACCC GGCCGTCTAC CCGCCGGCCG ACGTCGTGAA GACGCTGTTC
CTGCTCAAGC CGCTGCCGCC TGAAATCCAG CGTCTGCAGA CGCGTCTGTG GACCGAGCTG
AAATCGGGCC GCTGA
 
Protein sequence
MKAKVVGRFA ALALCVGASA AAAKDTQLNI YNWSDYIAKD TIPNFEKQTG VKVRYDNYDS 
DDTLQAKLLT GSSGYDIVVP TSNYAGKQIA AGIFTPLDKS KLPNLKHLDP QLMALVAGAD
PGNKYTVPWA YGTTGLAYNL TKAQQALGKV PLDNWDILFK PENISKLKAC GVSVLDAPDQ
MFAAALHYIG KDPMSTNPAD YKAAMEVLKK IRPYITQFNS SGYINDLVGG DICFAYGWSG
DVVIAKHRAI EAKKPYKVEY YIPKGGAPVW FDVMAIPKDA KNKDAALQWI NYIEDPKVHA
AITNAVYYPS ANAEARKYVR PDVANDPAVY PPADVVKTLF LLKPLPPEIQ RLQTRLWTEL
KSGR