Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1672 |
Symbol | |
ID | 6176457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 1872150 |
End bp | 1873244 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641681433 |
Product | extracellular solute-binding protein |
Protein accession | YP_001808375 |
Protein GI | 172060723 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0285778 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCAA AGGTAGTGGG CCGGTTCGCA GCGCTCGCGC TGTGCGTGGG TGCGTCGGCC GCAGCGGCGA AGGATACGCA GCTCAATATC TATAACTGGT CGGACTACAT TGCGAAGGAC ACGATCCCGA ACTTCGAGAA GCAGACGGGC GTCAAGGTTC GCTACGACAA CTACGACAGC GACGACACGC TGCAGGCTAA GCTGCTGACG GGCAGTTCGG GCTACGACAT CGTCGTGCCG ACCAGCAACT ACGCGGGCAA GCAGATCGCG GCCGGCATCT TCACGCCGCT CGACAAGTCG AAGCTGCCGA ACCTCAAGCA CCTCGATCCG CAACTGATGG CGCTCGTCGC CGGCGCCGAT CCGGGCAACA AGTACACGGT GCCCTGGGCA TACGGCACGA CCGGTCTCGC CTACAACCTG ACGAAGGCGC AGCAGGCGCT CGGCAAGGTC CCGCTCGACA ACTGGGACAT CCTGTTCAAG CCGGAAAACA TCTCGAAGCT GAAGGCCTGC GGCGTGTCGG TGCTCGACGC ACCGGACCAG ATGTTCGCCG CGGCGCTGCA CTACATCGGC AAGGATCCGA TGAGCACGAA CCCGGCCGAC TACAAGGCCG CGATGGAAGT GCTGAAGAAG ATCCGCCCGT ACATCACGCA GTTCAACTCG TCGGGCTACA TCAACGACCT GGTCGGCGGC GACATCTGCT TCGCGTACGG CTGGTCGGGC GACGTCGTGA TCGCGAAGCA TCGCGCGATC GAAGCGAAGA AGCCGTACAA GGTCGAGTAC TACATTCCGA AGGGCGGCGC ACCGGTCTGG TTCGACGTGA TGGCGATTCC GAAGGACGCG AAGAACAAGG ACGCCGCGCT GCAGTGGATC AACTACATCG AGGATCCGAA GGTGCACGCG GCGATCACGA ACGCCGTGTA CTACCCGAGC GCGAACGCCG AGGCCCGCAA GTACGTGCGG CCGGACGTCG CGAACGACCC GGCCGTCTAC CCGCCGGCCG ACGTCGTGAA GACGCTGTTC CTGCTCAAGC CGCTGCCGCC TGAAATCCAG CGTCTGCAGA CGCGTCTGTG GACCGAGCTG AAATCGGGCC GCTGA
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Protein sequence | MKAKVVGRFA ALALCVGASA AAAKDTQLNI YNWSDYIAKD TIPNFEKQTG VKVRYDNYDS DDTLQAKLLT GSSGYDIVVP TSNYAGKQIA AGIFTPLDKS KLPNLKHLDP QLMALVAGAD PGNKYTVPWA YGTTGLAYNL TKAQQALGKV PLDNWDILFK PENISKLKAC GVSVLDAPDQ MFAAALHYIG KDPMSTNPAD YKAAMEVLKK IRPYITQFNS SGYINDLVGG DICFAYGWSG DVVIAKHRAI EAKKPYKVEY YIPKGGAPVW FDVMAIPKDA KNKDAALQWI NYIEDPKVHA AITNAVYYPS ANAEARKYVR PDVANDPAVY PPADVVKTLF LLKPLPPEIQ RLQTRLWTEL KSGR
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