| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1671 |
|---|
| Symbol | |
|---|
| ID | 6176437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1870903 |
|---|
| End bp | 1872063 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641681432 |
|---|
| Product | spermidine/putrescine ABC transporter ATPase subunit |
|---|
| Protein accession | YP_001808374 |
|---|
| Protein GI | 172060722 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0354987 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGCC AGTCGGGTGC GCCGGTTGCG GGCGCGCCGT CCTTCGTTCC TTCGTCCGGC
GCGACTACGC GCGCCGAGAC CTTTGTCCAG ATCGTCGACG CCGTCAAGAA ATTCGGCGAG
ACCGAAGTGG TGCGCAGCGT GAACCTGACG GTGCGCCAGG GCGAGCTGTT CGCGCTGCTC
GGCAGCTCGG GTTCCGGCAA GTCGACGCTA TTGCGGATGC TCGCGGGCCT CGAGACGGTC
ACATCGGGCA AGATCCTGAT CGACGGCGAG GACCTCGCGC AGATGCCTCC GTACAAGCGC
CCCGTGAACA TGATGTTCCA GTCGTATGCG CTGTTCCCGC ACATGTCGGT CGAGGCGAAC
GTCGCCTACG GCCTGAAGCA GGAAGGCACG CCGAAGGCCG AGCTGAAGGA GCGCGTCGCC
GCGGCGCTCG AGCTCGTGCA GATGAGCAAG TACGCGAAGC GCAAGCCGCA CCAGCTGTCG
GGCGGCCAGC AGCAGCGCGT CGCGCTCGCG CGCTCGCTTG TCAAGCGTCC GAAGGTGCTG
CTGCTCGACG AGCCGATGTC GGCGCTCGAC AAGCAGATCC GCCAGCGCAC GCAGATCGAG
CTCGTCAACA TCCTGAAGAA GGTCGGCGTC ACCTGCATCA TGGTCACGCA CGACCAGGAA
GAGGCGATGA CGATGGCGAA CCGGCTCGCC GTGATGAGCG AAGGGCAGAT CGTGCAGATC
GGCTCGCCGA ACGAAGTCTA CGAATATCCG AACAGCCGTT TCTCGGCCGA GTTCATCGGC
TCGACGAACC TGTTCGACGG CGTCACGGTC GAGGACGAAC CCGACCACGT GTACATCGAA
TCCCCGGAGC TGCCGAGCCG GCTGTACGTG AGCCACGGGA TCACGGGCCC GCTCGGGATG
CCGGTCACGG TGTCGGTGCG CCCCGAGCGG ATCGCGCTCA CGCGCAAGCC GCCCGAAGGC
GCGTTCAACT GGGCGCGCGG CAGGATCACC AACGTCGCGT ACATGGGCGG CTATTCGCTG
TATCACGTGA AGCTCGACGC GGGCAAGACG GTGATCGCGA ACGTGTCGAG CCTCGCGATC
ACCGAGCTCG ACACGCCGTC GCTCGGCGAC GAGATCTACG TGCGCTGGAG CGCGACCGCA
GGCGTGGTGC TGACGTCATG A
|
|---|
| Protein sequence | MNSQSGAPVA GAPSFVPSSG ATTRAETFVQ IVDAVKKFGE TEVVRSVNLT VRQGELFALL
GSSGSGKSTL LRMLAGLETV TSGKILIDGE DLAQMPPYKR PVNMMFQSYA LFPHMSVEAN
VAYGLKQEGT PKAELKERVA AALELVQMSK YAKRKPHQLS GGQQQRVALA RSLVKRPKVL
LLDEPMSALD KQIRQRTQIE LVNILKKVGV TCIMVTHDQE EAMTMANRLA VMSEGQIVQI
GSPNEVYEYP NSRFSAEFIG STNLFDGVTV EDEPDHVYIE SPELPSRLYV SHGITGPLGM
PVTVSVRPER IALTRKPPEG AFNWARGRIT NVAYMGGYSL YHVKLDAGKT VIANVSSLAI
TELDTPSLGD EIYVRWSATA GVVLTS
|
|---|
| |