| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1662 |
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| Symbol | |
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| ID | 6177395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1860547 |
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| End bp | 1862145 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641681423 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001808365 |
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| Protein GI | 172060713 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.49733 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTGT CGATGAACCT GAAAACGAAG GCCGCGCGGG CGCTCGCGGC CGCGAGCCTC
GCCGGGCCGC TGGCCGGCTG CGCGTGGTTC GCGCCGAGCG GCGAGCCGCC CGCGATGCCG
TCGCCCGCGC ATTACGGCGC GACGCCGCAA TTGCAGCAGA CCGTCTCCGC GCAAGGTGTC
GCGCAGCAGT TCGAGGTCGG CGCGCAGCCG GTGCCCGACT GGTGGAAAGA GTACCGTTCC
GATGCGCTGA ACGCGCTCGT CGACGAAGGG CTGCGCAACA GCCCGACGCT CGGCGCGGCG
TCGCATTCGC TGGATGCCGC GCGCGAGCAG CTGCGCGGGC AGATCGGCAG CTCGATGCTG
CCGTCGATCG ACGCGGGCGC CCAGGCCACG CGCCAGCGCG CGCTCGGCGT GCCGATTCCC
GCGCTCGGCG CGCCGACGCT GCTGTACGAC ACGTTCGTCG GGCAATTGCA GGCGAGCTAC
ACGGTCGATC TGTTCGGCGT GTCGCGCTTC GCGAACCGCG CGCTCGCGAA ACGCGTCGAC
GTCAGTGCGT TCCAGCTCGA ATCCGCACGG CGCGCGCTGG CCGCGAACAT CGTCACCGCG
TCGATCACCG TGGCGGTGCT CAACGCGCAG ATCGAGACGA CCGAGCGGCT CGTCGCGCTC
GCGAACGATC AGGCGCACGA CGCCGAACGC CGCCATGCGC TTGGTTCGGC ATCGCGCAGC
GACGCGCTGA CTGCACGGCA AAGCGCCGAC ACGTTCGCGG CGAGCCTGCC CGCATTGCGC
CAGCAACGCG ACTCGGCCCG CCATGCGCTC GCGGTGCTGG TCGGCCGCAC GCCCGACCGG
CCGCCGGCCG ATCTCGCGCT CGCCGATCTG CACCTGCCCC AGCAGGTGCC CGTCGTCGTG
CCGTCGGATC TGCTGCAAAG CCGTCCGGAC ATCCAGGCCG CCGACGCTGG GCTGAAGGCC
GCCGCGGCCG AAGTCGGCCT CGCGACCGCG CAGATGTTCC CGCAGCTGTC GCTGTCGGCG
GCGATGGGTA AAGGCGGCTT CAGCTGGCCG ACGATGCTGT CGGGCGCCGG CTCGATATGG
AACGTCGGCG CGTCGCTGAG CCAGCCGATC TTCCACGGCG GTGCGTTGCT CGCCCAGCGT
CGCGCGGCGA AGGCGACCTA CGAGGCCGCG GTCGACCAGT ACAAGCAGGC CGTGCTCGGC
GCGTTCCAGA ATGTGGCCGA TTCGCTCGCG GCGCTCGAGC ACGATGCCGA GGCGCTCGAC
GCGTCGTCGC ACGCCGCGCT TTCCGCCCGC GGCGCGTACG ACGACGCGGC CGCCCGCGTG
CGGCTCGGCG CGCTGCCGCC GTCGGCCGCG CGTGCCAGCG AACTGCAGTA CCGCAATGCG
CGGCTCGACG AGCTTCGCGC GACCGGCGCA CGGTTCGCGG ATACCGCGCG GCTTTACCAG
GCGATGGGCA CGCCGCCGGT CGGCGGCGTC GGCAAGGACG GGAAAGCCGG GAAAGCCGAC
CCGGCCGGCA ATCCTGGCAA CGCGGCTCAC GACACCCCCG ACGCCCACGC GCGCACGGCC
GCACCCGACG CGCCGCCGTC GCCGCCGTCA CTGCAATAA
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| Protein sequence | MELSMNLKTK AARALAAASL AGPLAGCAWF APSGEPPAMP SPAHYGATPQ LQQTVSAQGV
AQQFEVGAQP VPDWWKEYRS DALNALVDEG LRNSPTLGAA SHSLDAAREQ LRGQIGSSML
PSIDAGAQAT RQRALGVPIP ALGAPTLLYD TFVGQLQASY TVDLFGVSRF ANRALAKRVD
VSAFQLESAR RALAANIVTA SITVAVLNAQ IETTERLVAL ANDQAHDAER RHALGSASRS
DALTARQSAD TFAASLPALR QQRDSARHAL AVLVGRTPDR PPADLALADL HLPQQVPVVV
PSDLLQSRPD IQAADAGLKA AAAEVGLATA QMFPQLSLSA AMGKGGFSWP TMLSGAGSIW
NVGASLSQPI FHGGALLAQR RAAKATYEAA VDQYKQAVLG AFQNVADSLA ALEHDAEALD
ASSHAALSAR GAYDDAAARV RLGALPPSAA RASELQYRNA RLDELRATGA RFADTARLYQ
AMGTPPVGGV GKDGKAGKAD PAGNPGNAAH DTPDAHARTA APDAPPSPPS LQ
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