| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1547 |
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| Symbol | |
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| ID | 6176029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1721371 |
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| End bp | 1723824 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641681308 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001808250 |
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| Protein GI | 172060598 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.160729 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.526328 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGGTCG TCGTCAGCCC GAGCCATGCG ACGGAATTCA ATTCGTCGTT CCTCGACATC
GACGGCACCA GCAATGTCGA CCTGTCGCAG TTCTCGCAGC CCGACTTCAC GCTGCCCGGC
GAGTACATGC TCGACGTGCA GGTCAACGAC CTGTTCTACG GGCTGCAGGC GATCCAGTTC
ATCGCGCTCG ACGCTTCCGG CGCGGGCAAG CCGTGCCTGC CGCCGGAACT CGTCGCGCGG
TTCGGGCTGA AGCCGTCGCT CGCGAAGGAC CTGCCGCGCT TGCAGGGCGG ACGTTGCGTC
GATCTCGGCG CGATCGAGGG CGCGACCGTC CGTTACCTGA AGAGCGACGG ACGGCTGAAG
ATCACGATTC CTCAGGCCGC GCTCGAATTC ACCGATTCGA CTTATTTGCC GCCGTCGAGC
TGGTCCGACG GGATTGCGGG CGCGATGCTC GACTATCGCG TGATCGCGAA CACGAACCGC
AACTTCGGTT CGGACGGCGG ACAGACGAAT TCGATCCAGG CCTACGGAAC GATCGGCGCG
AACTGGGATG CATGGCGCTT GCGCGGCGAC TACCAGGCGC AGTCGAACGT GGGCAACACG
GCGTATGCGG ACCGCACGTT CCGCTTCAGC CGGCTTTACG CGTTTCGCGC GCTGCCGTCG
ATCCAGTCGA CGGTGACGTT CGGCGACGAC TACCTGAGCT CGGACATTTT CGACACGTTC
GCGCTGACGG GTGCGTCGAT CCGCAGCGAC GATCGGATGC TGCCGCCTTC GCTGCGCGGC
TATGCGCCGC TGATCTCGGG CGTCGCGCGC ACCAACGCGA CCGTGACCGT GTCGCAGGCG
GGACGCGTGC TGTACGTGAC ACGCGTTTCG CCGGGCGCGT TCGCGCTGCA GAACATCAAC
ACGAGCGTGC AGGGCACGCT CGACGTCACG GTCGATGAGG AAGACGGCAG CGTGCAGCGC
TTCCAGGTGA CGACGGCCGC CGTGCCGTTC CTCGCGCGTA CCGGACAACT GCGCTACAAG
GCCGCCGTCG GCAAGCCGCG GCAGTTCGGC GGCGCCGGCA TCACGCCGTT CTTCGGGTTT
GGCGAGGCCG CGTACGGGCT GCCGTTCGAC ATCACGCTGT ACGGCGGCTT CATCGCCGCG
TCGGGCTATA CGTCGATCGC ACTGGGCGTC GGCCGCGATT TCGGCACGTT CGGCGCGGTA
TCGGCCGATG TCACGCATGC GCGTGCGCAC CTGTGGTGGA ACGGCGCGAC GCGCAACGGC
AACTCGTATC GCATCAATTA TTCGAAGCAC TTCGACGGGC TCGACGCGGA CGTGCGCTTC
TTCGGCTATC GCTTCTCCGA ACGCGAGTAC ACCAACTTCG CGCAGTTCTC GGGCGACCCG
ACCGCATACG GCCTCGCCAA CAGCAAGCAA CGCTACTCGG CGACGATGTC CAAGCGCTTC
GGCGACACGT CGACCTATTT CTCGTACGAC CAGACGACTT ACTGGGCCCG CGCGTCGGAG
CAGCGCGTCG GCCTCACGCT CACGCGCGCG TTCTCGATCG GCGCATTGCG CAACCTGAAC
GTCAGCGTGT CGGCGTTCCG CACGCAAAGC GCGGGCGCGA GCGGCAACCA GTTCTCGGTG
ACCGCGACGC TGCCGATCGG CGGCCGCCAC ACCGTCACGT CGAACCTGAC GACGGGCAGC
GGCAGCACAA GCATGAACGC GGGCTACATC TACGACGATC CGGCCGGCCG CACGTACCAG
ATCAACGCGG GCGCGACCGA CGGCCGCGCG TCGGCGAACG CGAGCTTCCG CCAGCGCACG
TCGACCTACC AGCTGAGCGC GCAGGCGTCG ACGCTCGCCA ACGCGTATGC GGCCGCGTCG
CTCGAAGTCG ACGGCTCGCT CGTCGCGACG CAGTACGGCG TGTCGGCGCA TGCGAACGGC
AACGCGGGCG ATACGCGGCT GCTGGTCTCG ACCGACGGCG TGCCCGACGT GCCGCTGTCC
GGCACGCTCA CGCATACCGA CTCGCGCGGC TACGCGGTGC TCGACGGGAT CTCGCCGTAC
AACGTGTACG ACGCGACCGT CAACGTCGAG AAGCTGCCGC TCGAGGTGCA GGTGTCGAAC
CCGATCCAGC GCATGGTGCT GACCGACGGC GCGATCGGCT TCGTGAAGTT CTCCGCCGCG
CGCGGCAGCA ATCTGTACCT GACGCTGACC GATGTGGCCG GCAAGCCGCT GCCGTTCGGC
GCATCCGTGC AGGACGCGGC GAACGGCAAG GAGCTCGGCA TCGTCGGCGA AGCCGGCGCC
GCGTTCCTGA CCCAGGTGCA GCCGAAATCC GCGCTGGTGG TGCGGGCAGG CGAACGCACG
CTGTGCGCGG TGAATGCATT GCCGAACCAG CTTCAACTCG AAGGCACGCC GATTCCGGTG
ACGTGCCAGC CGCCCGGCGA GTCGCATGCA GCGGCCGCAC GGGTCGACCG ATGA
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| Protein sequence | MLVVVSPSHA TEFNSSFLDI DGTSNVDLSQ FSQPDFTLPG EYMLDVQVND LFYGLQAIQF
IALDASGAGK PCLPPELVAR FGLKPSLAKD LPRLQGGRCV DLGAIEGATV RYLKSDGRLK
ITIPQAALEF TDSTYLPPSS WSDGIAGAML DYRVIANTNR NFGSDGGQTN SIQAYGTIGA
NWDAWRLRGD YQAQSNVGNT AYADRTFRFS RLYAFRALPS IQSTVTFGDD YLSSDIFDTF
ALTGASIRSD DRMLPPSLRG YAPLISGVAR TNATVTVSQA GRVLYVTRVS PGAFALQNIN
TSVQGTLDVT VDEEDGSVQR FQVTTAAVPF LARTGQLRYK AAVGKPRQFG GAGITPFFGF
GEAAYGLPFD ITLYGGFIAA SGYTSIALGV GRDFGTFGAV SADVTHARAH LWWNGATRNG
NSYRINYSKH FDGLDADVRF FGYRFSEREY TNFAQFSGDP TAYGLANSKQ RYSATMSKRF
GDTSTYFSYD QTTYWARASE QRVGLTLTRA FSIGALRNLN VSVSAFRTQS AGASGNQFSV
TATLPIGGRH TVTSNLTTGS GSTSMNAGYI YDDPAGRTYQ INAGATDGRA SANASFRQRT
STYQLSAQAS TLANAYAAAS LEVDGSLVAT QYGVSAHANG NAGDTRLLVS TDGVPDVPLS
GTLTHTDSRG YAVLDGISPY NVYDATVNVE KLPLEVQVSN PIQRMVLTDG AIGFVKFSAA
RGSNLYLTLT DVAGKPLPFG ASVQDAANGK ELGIVGEAGA AFLTQVQPKS ALVVRAGERT
LCAVNALPNQ LQLEGTPIPV TCQPPGESHA AAARVDR
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