| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1544 |
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| Symbol | |
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| ID | 6176196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1715308 |
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| End bp | 1718445 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641681305 |
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| Product | multidrug efflux protein |
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| Protein accession | YP_001808247 |
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| Protein GI | 172060595 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.280372 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGTT TCTTCATCGA TCGCCCCGTC TTCGCGTGGG TGATCGCACT CTTCATCATG
CTCGGCGGCG CGTTCGCGAT CCGCGCGCTG CCCGTCGCGC AATACCCGGA CATCGCGCCG
CCCGTCGTCA GCATCTATGC GACGTATCCG GGCGCGTCCG CGCAGGTCGT CGAGGAATCG
GTGACCGCGC TGATCGAGCG CGAAATGAAC GGCGCGCCGG GGCTGCTGTA TACGTCCGCG
ACGAGCAGCG CCGGCGCTGC GTCGCTGTAC CTGACGTTCA AGCAGGGCGT CAACGCCGAT
CTCGCGGCCG TCGAAGTGCA GAACCGGCTG AAGACGGTCG AGGCACGGCT GCCCGAACCG
GTGCGGCGCG ACGGCATCCA GGTCGAGAAG GCCGCGGACA ACATCCAGCT CGTCGTGTCG
CTGACGTCGG ACGACGGCCG GATGACCGCC GTGCAGCTCG GCGAATACGC GTCGGCGAAC
GTCGTGCAGG CGCTGCGCCG CGTCGACGGC GTCGGCAAGG TGCAGTTCTG GGGCGCCGAA
TATGCGATGC GGATCTGGCC CGACCCGGTG AAGCTGGCCG GTCACGGCCT CACCGCGTCG
GACATCGCGT CGGCCGTGCG CGCGCACAAC GCGCGCGTGA CGGTGGGCGA CATCGGCCGC
AGCGCGGTGC CGGACAGCGC GCCGATCGCG GCGACCGTGT TCGCCGATGC GCCGCTGAAG
ACGCCGGCCG ATTTCGGCGC GATCGCGCTG CGCACGCAGC CGGACGGCTC CGCGCTCCAC
CTGCGCGACG TCGCGCGTAT CGAGTTCGGC GGCAACGACT ACAACTATCC GTCGTACGTG
AACGGCAAGG TCGCGACCGG CATGGGCATC AAGCTCGCGC CGGGCTCGAA CGCGGTGGCG
ACCGAGAAGC GCGTGCGCGC GACGATGGAC AAGCTGTCCG CGTATTTCCC GCCGGGCGTG
AAATACCAGA TCCCGTACGA GACGTCGTCG TTCGTGCGCG TGTCGATGAA CAAGGTCGTC
ACGACGCTGA TCGAGGCCGG CGTGCTGGTG TTCCTCGTGA TGTTCCTGTT CATGCAGAAC
CTGCGCGCGA CCCTGATCCC GACGCTCGTC GTGCCGGTCG CGCTCGCGGG CACGTTCGGC
GTGATGTACG CGGCCGGCTT CTCGATCAAC GTGCTGACGA TGTTCGGGAT GGTGCTCGCG
ATCGGCATCC TCGTCGACGA TGCGATCGTC GTCGTCGAGA ACGTCGAGCG GCTGATGGTC
GAGGAGGGCC TCGCACCCTA CGACGCGACC GTCAAGGCGA TGCGGCAGAT CAGCGGCGCG
ATCGTCGGGA TCACCGTGGT GCTGACGTCG GTATTCGTGC CGATGGCGTT CTTCGGCGGC
GCGGTGGGCA ACATCTACCG GCAGTTCGCG CTGTCGCTCG CGGTGTCGAT CGGCTTCTCG
GCGTTTCTCG CGCTGTCGCT CACGCCCGCG CTGTGCGCGA CGCTGCTCAA GCCGGTGTCC
GGCGACCATC ACGAGAAGCG CGGCTTCTTC GGCTGGTTCA ACGGCTTCGT CGCGCGGTCG
ACGCAGCGTT ATGCGACGCG CGTCGGCGCG ATGCTGAAGA AGCCGCTGCG CTGGCTGGTC
GTGTACGGCG CGCTGACCGC GGCCGCGGCA TTGATGCTCA CGCAACTGCC GAGCGCGTTC
CTGCCCGACG AGGACCAGGG CAACTTCATG GTGATGGTGA TCCGGCCGCA GGGCACGCCG
CTCGCGGAAA CGATGCAGAG CGTGCGCGAG GTCGAATCGT ATATTCGCCG CGACGAGCCG
GCCGCATACA CGTTCGCGCT CGGCGGCTTC AACCTGTACG GCGAAGGGCC GAACGGCGGG
ATGATCTTCG TCACGCTGAA GAACTGGAAG GAGCGCAAGG CCGGGCGCGA TCACGTGCAG
GCGATCGTCG CGCGCATCAA CGAGCGCTTC GCGGGCACGG CGAACACCAC GGTGTTCGCG
ATGAACTCGC CGGCGCTGCC CGATCTCGGC TCGACGAGCG GCTTCGACTT CCGGCTGCAG
AACCGCGGCG GGCTCGACTA CGCCGCGTTC AGCGCCGCGC GCGAGCAACT GCTCGCGGTG
GGCGGCAAGG ATCGGGCGCT CACCGACGTG ATGTTCGCGG GCACGCAGGA CGCGCCGCAG
CTGAAGCTCG ACATCGATCG CGCGAAGGCG TCGGCGCTCG GCGTGTCGAT GGACGAGATC
AACACGACGC TCGCGGTGAT GTTCGGCTCC GACTATATCG GCGACTTCAT GCACGGCACG
CAGGTGCGTC GCGTGATCGT GCAGGCCGAC GGGCTGCACC GGCTCGATCC GGCCGACGTG
CAGAAGCTGC GCGTGCGCAA CGCGGGCGGC GAGATGGTGC CGCTCGCGGC GTTCGCGACG
CTGCACTGGA CGCTCGGGCC GCCGCAGCTC ACGCGCTACA ACGGCTATCC GTCGTTCACG
ATCAACGGCT CGGCCGCGCC CGGCCACAGC AGCGGCGAAG CGATGGCCGC GATCGAACGG
ATCGCCGCGA AGCTGCCGGC CGGCATCGGC CACGCGTGGT CGGGGCAGTC GTTCGAGGAG
CGGTTGTCGG GCGCGCAGGC GCCGATGCTG TTCGCGCTGT CGGTGCTCGT CGTGTTCCTC
GCGCTCGCGG CGCTGTACGA GAGCTGGTCG ATCCCGTTCG CGGTGATGCT GGTCGTCCCG
CTCGGCGTGA TCGGCGCGGT GCTCGGCGTC ACGCTGCGCG CGATGCCGAA CGACATTTAT
TTCAAGGTGG GGCTGATCGC GACGATCGGG TTGTCCGCGA AGAACGCGAT CCTGATCGTC
GAGGTCGCGA AGGATCTGGT CGCGCAGCGC ATGTCGCTCG TCGACGCCGC GCTCGAGGCC
GCACGCCTGC GGCTGCGGCC GATCGTGATG ACGTCGCTCG CGTTCGGCGT CGGCGTGCTG
CCGCTCGCGT TCGCGTCGGG CGCCGCATCC GGCGCGCAGA TGGCGATCGG CACCGGCGTG
CTCGGCGGCA TGATCACGGC GACGGTGCTC GCGGTGTTCC TCGTCCCGCT GTTTTTCGTG
ATGGTCGGCC GCCTGTTCGA CGTCGGCCCG CGCCGGCGCG GTGGCGCGCA GCCGGCGACG
ATGGAGGGTT CGCAGTGA
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| Protein sequence | MARFFIDRPV FAWVIALFIM LGGAFAIRAL PVAQYPDIAP PVVSIYATYP GASAQVVEES
VTALIEREMN GAPGLLYTSA TSSAGAASLY LTFKQGVNAD LAAVEVQNRL KTVEARLPEP
VRRDGIQVEK AADNIQLVVS LTSDDGRMTA VQLGEYASAN VVQALRRVDG VGKVQFWGAE
YAMRIWPDPV KLAGHGLTAS DIASAVRAHN ARVTVGDIGR SAVPDSAPIA ATVFADAPLK
TPADFGAIAL RTQPDGSALH LRDVARIEFG GNDYNYPSYV NGKVATGMGI KLAPGSNAVA
TEKRVRATMD KLSAYFPPGV KYQIPYETSS FVRVSMNKVV TTLIEAGVLV FLVMFLFMQN
LRATLIPTLV VPVALAGTFG VMYAAGFSIN VLTMFGMVLA IGILVDDAIV VVENVERLMV
EEGLAPYDAT VKAMRQISGA IVGITVVLTS VFVPMAFFGG AVGNIYRQFA LSLAVSIGFS
AFLALSLTPA LCATLLKPVS GDHHEKRGFF GWFNGFVARS TQRYATRVGA MLKKPLRWLV
VYGALTAAAA LMLTQLPSAF LPDEDQGNFM VMVIRPQGTP LAETMQSVRE VESYIRRDEP
AAYTFALGGF NLYGEGPNGG MIFVTLKNWK ERKAGRDHVQ AIVARINERF AGTANTTVFA
MNSPALPDLG STSGFDFRLQ NRGGLDYAAF SAAREQLLAV GGKDRALTDV MFAGTQDAPQ
LKLDIDRAKA SALGVSMDEI NTTLAVMFGS DYIGDFMHGT QVRRVIVQAD GLHRLDPADV
QKLRVRNAGG EMVPLAAFAT LHWTLGPPQL TRYNGYPSFT INGSAAPGHS SGEAMAAIER
IAAKLPAGIG HAWSGQSFEE RLSGAQAPML FALSVLVVFL ALAALYESWS IPFAVMLVVP
LGVIGAVLGV TLRAMPNDIY FKVGLIATIG LSAKNAILIV EVAKDLVAQR MSLVDAALEA
ARLRLRPIVM TSLAFGVGVL PLAFASGAAS GAQMAIGTGV LGGMITATVL AVFLVPLFFV
MVGRLFDVGP RRRGGAQPAT MEGSQ
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