| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1448 |
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| Symbol | |
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| ID | 6177304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1611287 |
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| End bp | 1612129 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641681205 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001808152 |
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| Protein GI | 172060500 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.34489 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGGA TCAGCAGGAT GGCGATGCGC GCAAGTAGGG TGGCAGCGGT GCTGCTGCTT
GGCGCTTGCG CGACCAAGGA GAGCGGTTAC GGTGTCGGTG CACAGGCCGA GCGGGCGGCG
CTGATTCAGG CGGCCGACCA GAAGCAGGCG GTGCCGGATA CGCCCGCGAT GTATCTCGGG
TTGATCCAAC GGATGCAGGC ACAGGGCCTC TATTACGCTT CGCTTGCGCA CATCGACGCT
TACGACAAGG CATACGGCAT GTCGCCGGAC ACGGTCTTAT TGCGCGCGGA CGCATTGCGC
ATGACCGACC AGCCGGCTGC GAGTGCGGCT GCCTATACGC AGTTGCTGAA GACGCCGCTC
GCCGCACGCG GTTATCGGGG CCTTGGGTTA ATCGCCGGTG CGGCCGGCGA TTTCGGTCGG
GCGGTACAGG CACTGACGCA GGCGTCCGAA CTCGCGCCGA CGGATGCGTC GCTGCTGTCC
GATCTCGCCT ATGCAAAATT GCGTAACGGC GACGTGGTCG GCGCGCGGGT GCCGCTGATG
AAGGCGGCTG AACTGGATCA ACGCAATCCG AAGATCGTCA GTAACCTCAC GCTGTATCTA
CTCGCTGCGG GACGCACACA AGATGCGCAG CGGCTGATGA ATCAGCAGCA TTTGCCGGCG
GATATCCGCA AGGACATCCT TGGCGATGCC GCAAAAATTG CAGCTGCGGC ACGTGCGCAG
CAACGGGCGG TCGCGATGCC GCCGGTGGTG TCGCGGCACG TCGCGACCGC CCCCATTACG
CCGATGGCGA ACAATTTCGA CTATGACCAG ACCGTGCCGC TGCTGCAACG GTTTGCACAA
TGA
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| Protein sequence | MKRISRMAMR ASRVAAVLLL GACATKESGY GVGAQAERAA LIQAADQKQA VPDTPAMYLG
LIQRMQAQGL YYASLAHIDA YDKAYGMSPD TVLLRADALR MTDQPAASAA AYTQLLKTPL
AARGYRGLGL IAGAAGDFGR AVQALTQASE LAPTDASLLS DLAYAKLRNG DVVGARVPLM
KAAELDQRNP KIVSNLTLYL LAAGRTQDAQ RLMNQQHLPA DIRKDILGDA AKIAAAARAQ
QRAVAMPPVV SRHVATAPIT PMANNFDYDQ TVPLLQRFAQ
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