| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1447 |
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| Symbol | |
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| ID | 6177103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1610276 |
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| End bp | 1611268 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641681204 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001808151 |
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| Protein GI | 172060499 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.411469 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCAA CTCAGATCGG ATCGGTTGCT CTGGCGCTCG GCGCGCTGGG CGTGCTGTTG
TTTGGAATGG TCGCGTTGCT GCGGGCGAGT GCCGCTTCGC GTGCCGAACG TGCGCTGGCC
GACGCGCTCG ACCGACGTAT GGCGGCGCTC GAAGCGGCCA GGGTGCCGAA GACGGCCGAA
GATGGCGCAA GCGCGAAACC GGATACGCGA GGCCGCCAAC GTATCGAGCG CATGCTCGAC
CGATTGTCGG CGGCGGGGAT GCGCTGGCTC GATACCGGAT TCGGCAAACA CATCGTCGCG
GAAGAAGATC GCCGTATTCT CGAGCAATGC GGCTACGTCG ACACGCGCAC GCGCGGGCTG
TTCCTCAGCG CGCGGATTGC GTGTGGGATT GCGTTGCCGC TTCTGTTCGC GATATTCGCC
AGCGGGCACT TGAAGGGCAG ACATTGGATG ATCGGGACGT TCGCCGCATT CGCGCTCGGT
TTCATGTTGC CGAAGCTTGT CTTGCGGCGC CGGGCGGCAG CTCGTCGCCA AAGCGTCGTC
GATGAACTGC CGCTGTTCGT CGACATGTTG CGCCTGTTGC AGGGCGTCGG GCTGTCACTG
GATCAAAGTC TTCAGGTTGT GACGAACGAT TTTCGCGGGA TGATGCCGGT GCTGTCGTCC
GAGGTTGGGA TCGCACAGCG TCAATTCGCG GCGGGCCGCA CGCGCGATCA GTCGATGCAA
AGGTTGTCGA GCGGATTCGA CAACGAGGAC TTGCGCGCGA TTGCCCGATT GGTGGTGCAG
GTCGACAAGC ACGGCGGCGC GGTCCAGGAG CCGCTCAAGC AGTTCGGCGA CCGGCTGCGT
GAGACGCGCC GCGCGATGCT TCGCGAGCGG ATCGGTCGAC TGACCGTGAA GATGACAGGC
GTCATGGTGC TGACGCTGTT GCCGGCACTG TTGATCGTGA CGGCTGGTCC GGGGTTTCTG
GCGGTGATGC ATGCGCTGTC GGCGCATCAT TGA
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| Protein sequence | MTATQIGSVA LALGALGVLL FGMVALLRAS AASRAERALA DALDRRMAAL EAARVPKTAE
DGASAKPDTR GRQRIERMLD RLSAAGMRWL DTGFGKHIVA EEDRRILEQC GYVDTRTRGL
FLSARIACGI ALPLLFAIFA SGHLKGRHWM IGTFAAFALG FMLPKLVLRR RAAARRQSVV
DELPLFVDML RLLQGVGLSL DQSLQVVTND FRGMMPVLSS EVGIAQRQFA AGRTRDQSMQ
RLSSGFDNED LRAIARLVVQ VDKHGGAVQE PLKQFGDRLR ETRRAMLRER IGRLTVKMTG
VMVLTLLPAL LIVTAGPGFL AVMHALSAHH
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