| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1436 |
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| Symbol | |
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| ID | 6176402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 1597543 |
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| End bp | 1599228 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641681193 |
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| Product | polypeptide-transport-associated domain-containing protein |
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| Protein accession | YP_001808140 |
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| Protein GI | 172060488 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0737479 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0360186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCCA GATTCGATAC ATGGATGATG CTGCTCGCCA TCGCAGCAGC AGGCACGGCA
CAGGCACAGA CGCGCGCAGC AGGCAACCCC CTCGACTCCC TCCCCCAGAT CAACGCGCCG
AAGAAAGGCC CGAGCGTCAC CGTGCAGGTC GCGCCGCAGG CACCGCAGTT GCAGGAGCTG
CTGTCGCGGC ACGTGACACC GACAACGTTC CAGGTCGAAG GCGTGAAGTC GGTGCCGTTC
GACGAAATCT CGCGTCGCTT CACGCCCCTC GTCGGCAAGG ACATCACGAT CGGCGAGCTG
ATCGAAACCG CCAACGGCGT GACCAGGCTG TACCAGGATC GCGGCTATGC GCTGTCGTTC
GCGTTCATTC CCGCGCAGAC GTTCGAGAAT GGCGTCGTGC GCGTCACGGT CGTCGAAGGC
TACGTGTCGG ACGTCAAGGT CACCGGCAAG CCCGGCGCGA TGGAATCGAA GATCCGCGCG
ATCGCCGCGC ACATCACGGC CGATCGCCCG CTGCGCCGCG CGACGTTCGA ACGCTACGTG
AACACCTTCG GCCTCCTGCC CGGCGTCACG GTGAAGGCCA ACGTGCCGCC GCCGCAAACG
ACCGACGGCG CGACGACGCT CGAACTCGCC GTCGACCGCA AGGCATTCAA CATCAGCACC
GGCATCGATT TCAATCACCC GGGCGTCCAG GGGCTCATCA CCGCGACGGA GAACGGCCTC
ACGTCGTTCG GCGAGCAATT GAGCATTTCC GCGCTGGTGC CGCCCGGACG CGACAAGCAG
ACCTACGTCG CATTCAGCGG CGCGGTGCCG GTCGGCAGCA GCGGCCTGGT CACGCGACTC
GACGCCAGCA CGTATCGCGG CAAGCCGACC GACAACCCGG GCCTGCCGTC GACCGTCGAG
CGCACGGTCA AGAACGAGAA GCTCGGTCTT TCGGCATCCT ATCCGTTGCT GCTGAACAAC
CAGCGCAGCC TGCTCGGCAC CGTGTCGGGC TATGCGTCGC ACAACGAAGA CCGCTACCAG
AACACGATCA CCGGCAACAG CATCGACACG CGCTCGCAGG TCCGCGTGCT GCAGATGCAG
CTCGACTACA CGAGCGTGTC GGCCAAGCAG GTTCAGAAAC TCAGCGTCAA CGTCGCGAAG
GGCTTCAACA TTCTCGGCGC GTCGAAATCG CAGGACATCA CGCTCGGCTC GAACACGACG
TCGGTGGACA GCCCGATTTC GCTGACGTTC GTGCGCACCG GCGCGACCTT CACGCAAACC
AACGAATGGC CGTTCAAGAT CGGCACGTCG GTGTCGCTGA CCGGCCAGTA CAGCCCCGAT
TCGCTGCCGA CGTCCGAACA GATCTCGTTC GGTTCGACGC GCTATGCGCT CGGCTACCAG
CCCGGCGAAA CGTCGGGCGA CTCGGGTTGG GGGATGTCGC TGGAGGTCAA TCGCGCCTTC
ACGCCGGGCT GGACGTACAT GAAGTCGATC ACGCCGTACA TCGCTTATGA CAGGGCACGC
GTGTACCTGC ATACGGGCAC GCCGTCGCCG AGCCGCTTGT CGTCGGTCGG TATCGGCGTA
CGATTTTCGG ACAGTCGCTA CTACAGTCTC GACCTGAATA TCGCGAAGCC GGTGGGCGAT
GCACCGGTCG AAAGCGCATC GCGCAGCCCG CGCGTGAATG CCGCATTCTC GTATCAGTTG
AACTGA
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| Protein sequence | MKSRFDTWMM LLAIAAAGTA QAQTRAAGNP LDSLPQINAP KKGPSVTVQV APQAPQLQEL
LSRHVTPTTF QVEGVKSVPF DEISRRFTPL VGKDITIGEL IETANGVTRL YQDRGYALSF
AFIPAQTFEN GVVRVTVVEG YVSDVKVTGK PGAMESKIRA IAAHITADRP LRRATFERYV
NTFGLLPGVT VKANVPPPQT TDGATTLELA VDRKAFNIST GIDFNHPGVQ GLITATENGL
TSFGEQLSIS ALVPPGRDKQ TYVAFSGAVP VGSSGLVTRL DASTYRGKPT DNPGLPSTVE
RTVKNEKLGL SASYPLLLNN QRSLLGTVSG YASHNEDRYQ NTITGNSIDT RSQVRVLQMQ
LDYTSVSAKQ VQKLSVNVAK GFNILGASKS QDITLGSNTT SVDSPISLTF VRTGATFTQT
NEWPFKIGTS VSLTGQYSPD SLPTSEQISF GSTRYALGYQ PGETSGDSGW GMSLEVNRAF
TPGWTYMKSI TPYIAYDRAR VYLHTGTPSP SRLSSVGIGV RFSDSRYYSL DLNIAKPVGD
APVESASRSP RVNAAFSYQL N
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