| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1427 |
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| Symbol | |
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| ID | 6177111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 1584734 |
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| End bp | 1586230 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641681184 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001808131 |
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| Protein GI | 172060479 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0987986 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCCT CCCCGTTGTC CGTGCGCGCC GGGTCGTGCC GCGCCGCCGT CGCCGCCGCG
GTTGCCGCGC TGGCGCTGGC GGGCTGCGCA AACTACATCG GCATCAAGAG CGACAAGCAG
ATCGCTCCCG CGTCGCAATT CGACACCGCC CAGAGCCTGC CGGCCCAGGG CGGCCAGTGG
CCGGCGCTCG ACTGGGCCAA CCAGTTCGGC GATCCGCAAT TGCCGAAGCT GATCGACGAG
GCGCTCGAGG GCAGCCCGTC GATCGCGCAG GCGCAGGCGC GCATCGCGAA AGCATCGTCG
TACATCGAAT CGTCGCGCTC GAACCTGATG CCGAAGGCCG AAGCCAGCTA CTCGTGGACG
CGCGAGCTGT ATTCGTCGAA CGCGCTGTTC CCGCCGCCGT ACGGCGGCCA GTGGTACAGC
GAGAACAACG CGCTCGCGAG CGCGTCGTGG GATCTCGACC TGTGGGGCAA GAATCGCGAG
CGCCTGCACA CGGCCGTGTC GCAGGAAAAG GCCGCCGAAG CCGACATGCA GCAGGCGCGC
ATCACGCTCG CGGCGTCGGT CGCCCGCACC TACAACTCGC TCGCGCAACT GTATGCGCTG
CGCGACATCG CGCAACGTGA GATCACCAAC CGCCAGACGG TCGGCAAGAT CACCGACGGC
CGCGTGTCGG CCGGCCTCGA CACCAATGTC GAACGCCAGA CCGCGCGAGG CAATATCGCG
ACGACCCAGG CGTCGCTGTC CGACCTCGAC GGCCAGATCA CGACCGTGCG CTACCAGCTC
GCCGCGCTGC TCGGCAAGGG TCCGGACCGC GGGCTGCAGA TCGCCGCGCC GGTGATGAGC
CCGGCCGGCG ACGTCGCGCT GCCGGGCAAC CTGCCGGCCG ACCTCGTGTC GCGCCGCCCC
GACATCGTCG CCGCGCGCTG GCAGGTCGAG GCCGCGATGC ACGACGTGAA GGAAGCGAAG
GCCGAGTTCT TCCCGGACGT GAACCTCGCG GCCGGCTTCG GCTTCGATGC GTTCGGGTGG
GGCAAATTCC TGAATTTCGC GAGCCGCCAG GCGCAGTTCG GCCCGGCCAT CCACCTGCCG
ATCTTCGATG CGGGCGCGTT GCGCGCGCAG CTCAAGGGCC GTTATGCGGA CTTCGACCTG
TCGGTCGCGA ACTACAACCA GACGCTGATC AACGCGCTGA ACGACGTCGC GACGCAGGTC
GCGTCGATCC GCGCGGTCGA TCGCCAGATG GACGACGCGC AGCGTGCGCT CGACGCGTCG
ACGCGTGCGT ACGATCTCGC TGTGATCCGC TACAAGGCCG GCCTGTCGCC CCAGCTCCAG
GTACTGACCG CGGACAGCAA CCGCCTCGCA TCGGAACAGA CGGTGACCAA CCTGAAGATG
CGCCGGCGCG ACATGCAGCT CGCGCTGATC AAGGCGCTCG GCGGCGGGTT CGACGCGACC
GGCACGCGGC TCGCCGCGCC CGACGCCGAC AAGCCGACGA AACAGGCCGC CAACTGA
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| Protein sequence | MKSSPLSVRA GSCRAAVAAA VAALALAGCA NYIGIKSDKQ IAPASQFDTA QSLPAQGGQW
PALDWANQFG DPQLPKLIDE ALEGSPSIAQ AQARIAKASS YIESSRSNLM PKAEASYSWT
RELYSSNALF PPPYGGQWYS ENNALASASW DLDLWGKNRE RLHTAVSQEK AAEADMQQAR
ITLAASVART YNSLAQLYAL RDIAQREITN RQTVGKITDG RVSAGLDTNV ERQTARGNIA
TTQASLSDLD GQITTVRYQL AALLGKGPDR GLQIAAPVMS PAGDVALPGN LPADLVSRRP
DIVAARWQVE AAMHDVKEAK AEFFPDVNLA AGFGFDAFGW GKFLNFASRQ AQFGPAIHLP
IFDAGALRAQ LKGRYADFDL SVANYNQTLI NALNDVATQV ASIRAVDRQM DDAQRALDAS
TRAYDLAVIR YKAGLSPQLQ VLTADSNRLA SEQTVTNLKM RRRDMQLALI KALGGGFDAT
GTRLAAPDAD KPTKQAAN
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