| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1419 |
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| Symbol | |
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| ID | 6177149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1573245 |
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| End bp | 1574963 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641681176 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_001808123 |
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| Protein GI | 172060471 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0617825 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACAGATA TCCACGATAT TGAATCGTCC GCGCCTGCCG CACAGGCCGC GCGTGCCGAC
GATGCGCCGG AGCAGGACGC TCCGGCCGCG GGTGGTGACG AGCGTCCCCG CCGCGGCCTG
CGGCGCGGTC CGCGCAGCCT GATCGCGCGT CGCCGCGCGG CGGCCAAGTC GAAGGGCGCC
GAGGGCGAGT CGCAGGACGG CGAAGGCGCA GACGCGCCGC CGGCCGAGGC CGCCGAAGCG
CAGCCCGCAC GCGCACCGCG CAAGGAAGGC GCGGCCAGGG GCGGCCGCAA GCCGGCCGCC
AAGCGTGAAG GTGCACCCAA GGGCGCGCAG GGCGGACAAG GCGGCCAGGG GCGGCGTGGC
AGCCCGGCGA AAGCCGAGGG CGGCGCGGCG AAGGCCGAAG GCGATGCAGC GTCGCAGGAC
GATCTGTTCG CCTATGTGAC GTCGCCGGCC TTCGACGCGG ACAACTCCGC GGGCGGCAGC
GGCGTGCGTG CACCGATGCT GCGGCGCGGT CGCACCCAGC CGACGAACAA GCGGGTGCTG
TCGCCGGACG ACGACGCGCC GAAGCTTCAC AAGGTGCTCG CGGAAGCGGG CATGGGCTCG
CGTCGCGAAA TGGAAGAGCT GATCGTCGCC GGCCGCGTGT CGGTGAACGG TGAGCCTGCG
CACATCGGCC AGCGCATCAT GCCGACCGAC CAGGTCCGCA TCAACGGCAA GCCGGTCAAG
CGCAAGCTGC CGAACAAGCC GCCGCGCGTG CTGCTGTACC ACAAGCCGAC GGGCGAGATC
GTCAGCCATG CGGATCCGGA AGGCCGTCCG TCGGTGTTCG ATCGCCTGCC GCCGATGAAG
ACGGCGAAAT GGCTCGCGGT GGGCCGCCTC GACTTCAACA CCGAAGGTCT GCTGATGCTG
ACCACGTCCG GCGATCTCGC GAACCGCTTC ATGCATCCGC GTTATAGCGT CGAGCGCGAG
TATGCGGTGC GTGTCGTCGG CGAGTTGTCC GAAGGCATGC GGCAGAAGCT GCTGCATGGC
GTCGAGCTCG ATGACGGCCC GGCGAACTTC CTGCGCATCC GCGACGGCGG CGGCGAAGGC
ACGAACCACT GGTATCACGT CGCGTTGGCC GAAGGCCGTA ACCGCGAAGT GCGCCGTATG
TTCGAAGCGG CCGGCCTGAT GGTGAGCCGC CTGATCCGCA CGCGCCACGG CCCGATCCCG
CTGCCGCGCG GCCTGAAGCG CGGTCGTTGG GAAGAGCTCG ACGAGGCGCA GGTGCGCAAG
CTGATGGCGA CCGTCGGCCT GAAGGCGCCG TCCGAGGAAA AGGGCAAGCG CGGTGGCAGT
GGGCCGGCCG AGCGCCGCCA GCCGGATCCG ATGCAGACGT CGATGGGCTT CATCAGCCGC
GAGCCGGTGC TGACCACGCA TGGTCAACTC GACCAGCCGC GTCGCGGCGG CGGTCGGCGC
GGCGGCCCCG GCCTGCCGGG CCTGAGCGGC TACGGCAGCC TGCCGGTTTC GCCGTCGGGC
CATGGCAATC GCTCGGGTGG CGGTCGCGAT GTCGACGGCA ATCGCGCGTC GTATGGCGCC
GGTCCCAAGC GTGAAGGCGG CGCGGGCGCC AAGCGTGGCG GCAGCAAGGG CGGCGGTAAC
CGCAACCCGA ACGGCAATCG CGCCGAAGGC GGCGGCAACG CCGGTGGTGG TGCACGCGGC
GGTCAGCGCC CGCAGCGCAA TCGCTCGCGC GGTCGCTGA
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| Protein sequence | MTDIHDIESS APAAQAARAD DAPEQDAPAA GGDERPRRGL RRGPRSLIAR RRAAAKSKGA
EGESQDGEGA DAPPAEAAEA QPARAPRKEG AARGGRKPAA KREGAPKGAQ GGQGGQGRRG
SPAKAEGGAA KAEGDAASQD DLFAYVTSPA FDADNSAGGS GVRAPMLRRG RTQPTNKRVL
SPDDDAPKLH KVLAEAGMGS RREMEELIVA GRVSVNGEPA HIGQRIMPTD QVRINGKPVK
RKLPNKPPRV LLYHKPTGEI VSHADPEGRP SVFDRLPPMK TAKWLAVGRL DFNTEGLLML
TTSGDLANRF MHPRYSVERE YAVRVVGELS EGMRQKLLHG VELDDGPANF LRIRDGGGEG
TNHWYHVALA EGRNREVRRM FEAAGLMVSR LIRTRHGPIP LPRGLKRGRW EELDEAQVRK
LMATVGLKAP SEEKGKRGGS GPAERRQPDP MQTSMGFISR EPVLTTHGQL DQPRRGGGRR
GGPGLPGLSG YGSLPVSPSG HGNRSGGGRD VDGNRASYGA GPKREGGAGA KRGGSKGGGN
RNPNGNRAEG GGNAGGGARG GQRPQRNRSR GR
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