| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1321 |
|---|
| Symbol | |
|---|
| ID | 6177751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1462827 |
|---|
| End bp | 1464047 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641681078 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001808027 |
|---|
| Protein GI | 172060375 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.680046 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.169906 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGCCC TGAGCCATAT CCGCGTGCTG GACCTCACCC GCGTGCTCGC GGGCCCGTGG
TGCGCGCAGA CCCTTGCCGA TTTCGGCGCG GACGTGATCA AGATCGAGCG CCCCGGCGCC
GGCGACGACA CACGCCATTG GGGGCCGCCG TACCTGAAGG ACGCAGCCGG CGCCGATACG
GCCGAGGCCG CCTACTACCT CGCGGCGAAC CGCAACAAGC GCTCGGTCAC GGTCGACATC
GCGACGCCCG AAGGCCAGCA GATCGTGCGC GAGCTCGCCG CGCAAAGCGA CGTCGTGCTC
GAGAACTACA AGGTCGGGCA GCTCGCGAAG TACGGGCTCG ACTACGACTC GCTGCGCGCG
GTGAAGCCCG ATCTCGTCTA CTGCTCGGTC ACCGGCTTCG GCCAGACCGG CCCGTATGCG
CATCGCGCGG GCTACGACTT CATCGTCCAG GGCATCGGCG GTTTCATGAG CATCACCGGC
GAGCGCGACA GCGAGCCGGG CGGCGGCCCG CAGAAGGCCG GCGTCGCGAT CGCCGATCTC
GCGACCGGCC TCTATTCGAC GATCGCGGTG CTCGCCGCGC TCGCGCACCG CGACCGCACG
GGCGAAGGCC AGTACATCGA CATGGCGCTG CTCGACGTGC AGGTCGCGCT GCTCGCGAAC
ATGAACACCA ACTTCCTCGC GAGCGGCAAG CCGCCGGTGC GCTGGGGCAA CGCGCATCCG
AACATCGTGC CGTACCAGAC GTTCCAGACG AGCGACGGCT GGATCATCGT CGCGGTCGGC
AACGACGGGC AGTTCCGCAA GTTCGTCGAG GCCGGCGGCC GGGCCGAGCT GGCCGACGAC
GAACGGTTCG CGACCAACCC GTCGCGCGTG CGCCATCGCG ACACGCTGGT GCCGATCCTC
GCGGAGATGG TGAAGACACG CGGCAAGGCC GACTGGATCG GCACGCTGGA AGCGGCCGGC
GTGCCGTGCG GGCCGATCAA CGAACTCGAC GAAGTGTTCG ACAACGAACA GGTGGTCGCG
CGCGGGATGC AGGTGTCGCT GCCGCATCCG TGCGGCGCGG ACGTGAAGCT CGTGCGCAAC
CCGATCCGGA TGAGCGTGAC GCCGCCCGAT GCGCGCACGG CCCCGCCGCT GCTCGGCGCG
CAGACGGAGG ACGTGCTGCG CGACATGCTT GGCTACGACG ACGAGCGGAT CGCCGCGTTG
AAGGCGAAGC AGGCGATTTG A
|
|---|
| Protein sequence | MGALSHIRVL DLTRVLAGPW CAQTLADFGA DVIKIERPGA GDDTRHWGPP YLKDAAGADT
AEAAYYLAAN RNKRSVTVDI ATPEGQQIVR ELAAQSDVVL ENYKVGQLAK YGLDYDSLRA
VKPDLVYCSV TGFGQTGPYA HRAGYDFIVQ GIGGFMSITG ERDSEPGGGP QKAGVAIADL
ATGLYSTIAV LAALAHRDRT GEGQYIDMAL LDVQVALLAN MNTNFLASGK PPVRWGNAHP
NIVPYQTFQT SDGWIIVAVG NDGQFRKFVE AGGRAELADD ERFATNPSRV RHRDTLVPIL
AEMVKTRGKA DWIGTLEAAG VPCGPINELD EVFDNEQVVA RGMQVSLPHP CGADVKLVRN
PIRMSVTPPD ARTAPPLLGA QTEDVLRDML GYDDERIAAL KAKQAI
|
|---|
| |