| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1290 |
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| Symbol | |
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| ID | 6177932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 1426967 |
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| End bp | 1428211 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641681047 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_001807996 |
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| Protein GI | 172060344 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0190271 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGCG CCGCGATTGA ATGGCAAGAA TTACGCCGTT GCTGCCTGCC GGACCGACCG
GCATACTGCC GGCGCGCCGG ACTGGCCGGT CGAACACCCG ACTACCGGCC GAATGCCGGG
TGCGACCCCT TGCGGGCCGC CCGGAATGCG CTGCCGCGCG AGCGGCGCGT ATGCTACCGC
AAGCTCGCGC CGAGCGCCGC GCTTTCTTCA TGGAAAACTG ACTTGGATCA ATTCGTCGAC
ACCGCCACGC CGTCCCCCGA CACGCTGCTG CGCATCATTG CCGCGCAGGC CGAGATCGCG
AAACTCGGCC TCGATCTCGG CAGCGTGATG GCTTACGTGA CCGAACAGGT GCCGCAGCTC
ACGGGCGCGA GCGGCGCGGC GGTCGAATTC GCCGAAGGCG ACGACATGGT GTACCGCGCC
GCGTCGGGCT CCGCAGCCGG AATGCTCGGG CTGCGGCTGC GCCGCTCGGG CAGCCTGTCC
GGCATGTGCG TGACGCGCGG TGAATTGCTG CGCTGCACGG ATTCGGAAAC CGACCCGCGC
GTCGATCGCG ACGCGTGCCG CCGGGTCGGG CTGCGCTCGA TGCTGGTGAT GCCGCTCACG
CATGCGGACA CGACGGTCGG CGTGCTGAAG GTGATGTCGC CGGACGTCGA CGGTTTTTCG
GCCGCCGACG CAGGCACGCT GCGGCTGATG GCCGACCTGA TCGCCGCCGC GATGTTCCAC
GCGGCGCGCA ACGAAGCCAA CGAGCTGTAC CTGCGCGCGA CGCACGACGC GCTCACCGGC
CTGCCGAACC GCGCGCTGTT CTACGACCGC CTGCGCCAGT CGATGCACAC GGCGCTGCGC
GCGAACGGCC GGCTCGGTAT CCTCAACATC GACATGGACG GGCTCAAGCC GATCAACGAC
GGCCTCGGCC ACCGCGCCGG TGACGCCGCG CTGCGCGAGA TCGCGATGCG GATGCTCGGC
GCCGTGCGGC GCTCGGATAC GGTTGCGCGC GTGGGCGGCG ACGAGTTCGC GGTGATCCTG
CCGAACGTCG GCGGCCGCGA CGACGTCGAC GCGCAACGCG CCCGGCTCGC GCGGAAGGTC
GGCGAGCCGT TCGAATTCGA CGGGCATCCG CTGCGGCTCG GCGTCAGCGT CGGCATCGCG
ATGCTGCCCG ACGACGGCAC CGACATGAAC GCGCTGATCG AACATGCGGA TCGGGAGATG
TATGAGGTAA AGCGCACGCG GACGCGGCGG GTGGCGCAGG TGTGA
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| Protein sequence | MLRAAIEWQE LRRCCLPDRP AYCRRAGLAG RTPDYRPNAG CDPLRAARNA LPRERRVCYR
KLAPSAALSS WKTDLDQFVD TATPSPDTLL RIIAAQAEIA KLGLDLGSVM AYVTEQVPQL
TGASGAAVEF AEGDDMVYRA ASGSAAGMLG LRLRRSGSLS GMCVTRGELL RCTDSETDPR
VDRDACRRVG LRSMLVMPLT HADTTVGVLK VMSPDVDGFS AADAGTLRLM ADLIAAAMFH
AARNEANELY LRATHDALTG LPNRALFYDR LRQSMHTALR ANGRLGILNI DMDGLKPIND
GLGHRAGDAA LREIAMRMLG AVRRSDTVAR VGGDEFAVIL PNVGGRDDVD AQRARLARKV
GEPFEFDGHP LRLGVSVGIA MLPDDGTDMN ALIEHADREM YEVKRTRTRR VAQV
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