| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1266 |
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| Symbol | |
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| ID | 6177550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 1400114 |
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| End bp | 1401274 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641681024 |
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| Product | porin |
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| Protein accession | YP_001807973 |
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| Protein GI | 172060321 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.162269 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCA CGACCCTCTC GCTGATTTCG CTCGCGTCGT TCGCCGCGAT CCCCGCCGCG
CACGCGCAGT CGAGCGTGGC GCTGTACGGC GTGATCGACA CGTCGATCAC GTACGTGAAT
CACGCGCAGG GCAAGGACAA CGCATGGATG CTCGGCAACA GCAGCGCGGG CAACCTCTCC
GGCAGCCGCT GGGGCGTGAA AGGCACCGAA GATCTCGGCG GCGGGCTGAA GGCGCTGTTC
CAGCTCGAGA ACGGCTTCGA CCCGAGCAAC GGCCGGCAGG GCCAGGGCGG CCGCCTGTTC
GGCCGGCAGG CATTCGTCGG GCTGACGAGC GAGCGCTACG GCACCCTCAC GTTCGGCCGC
CAGTACGATC CGCTCGTCGA CCTCGTGCAG GGCATCACCG CCGACAACTA TCTCGGCAGC
GTGTTCGCGA CGCCGGGCGA CGTCGACAAC TACGACAACA GCTTCCGCGT CGACAACGCG
GTGAAGTACA CGTCGGCCGT GTATTCGGGG TTGCAGTTCT CCGCGATGTA CTCGTTCGGC
GGCATCGCCG GCAGCACCGG CGCCGCGCAG TCGTATTCGG CGGCCGTGTC GTACAACAAC
GGGCCGTTCA GCGTCGCCGG CGGCTACTTC CACGCGACCA ACAGCCCCGC GTCGAACGGC
CTGCGCGACG GCTGGACCAG CTCGTCGGAC GGCACCTTCG ACGGCCCGAT CAACAGCGGC
TATGCGAGCG CCCACTCGAT CGGCATCGCC CGCATCGCGG GCCAGTACGT CGCCGGCCCG
TTCACGTTCG GCCTCGGCTA CAGCAACGCG CAGTACCGTC GCGACGCAAG CTCGGCGTTC
GACTCGAATG AGCACTACAA CACCGGGCAA GGCTTCGTGA ACTACCAGGC AACCGACGCG
CTGCTCGTCG GCGTCGGCTA CAGCTATACG CGCTCGGGCG GCGATACGTC GGCGACCTAT
CACCAGGTGT CGGCCGGCGC GGACTACAGC CTGTCGAAGC GCACCGACGT GTACCTGAGC
GCCGCGTACC AGCATGCGAG CGGCCAGACC GGCGACGGCA AAGGCGGATC GATGGCCGCG
CAGGCGTCGA TCGCGTCGTA CGGCTATGCG GGCACGAGTT CGCAGACGAT GGTCAACCTC
GGGCTGCGTC ACCGCTTCTG A
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| Protein sequence | MKRTTLSLIS LASFAAIPAA HAQSSVALYG VIDTSITYVN HAQGKDNAWM LGNSSAGNLS
GSRWGVKGTE DLGGGLKALF QLENGFDPSN GRQGQGGRLF GRQAFVGLTS ERYGTLTFGR
QYDPLVDLVQ GITADNYLGS VFATPGDVDN YDNSFRVDNA VKYTSAVYSG LQFSAMYSFG
GIAGSTGAAQ SYSAAVSYNN GPFSVAGGYF HATNSPASNG LRDGWTSSSD GTFDGPINSG
YASAHSIGIA RIAGQYVAGP FTFGLGYSNA QYRRDASSAF DSNEHYNTGQ GFVNYQATDA
LLVGVGYSYT RSGGDTSATY HQVSAGADYS LSKRTDVYLS AAYQHASGQT GDGKGGSMAA
QASIASYGYA GTSSQTMVNL GLRHRF
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