| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1136 |
|---|
| Symbol | |
|---|
| ID | 6177133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1258472 |
|---|
| End bp | 1259809 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641680892 |
|---|
| Product | branched-chain alpha-keto acid dehydrogenase subunit E2 |
|---|
| Protein accession | YP_001807843 |
|---|
| Protein GI | 172060191 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.390903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.428586 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGATTC ATGTGATCAA GATGCCGGAT ATCGGCGAAG GGATCGCCGA GGTCGAGCTG
GTGGCCTGGC ATGTGGAAGT CGGGCAGACG ATCAAGGAGG ACCAGCCGCT CGCCGACGTG
ATGACCGACA AGGCCGCGGT GGAGATTCCG TCGCCGGTGG CGGGCAAGGT GCTGGCGCTC
GGCGGCCGGA TCGGCGAGAT GATGGCGGTC GGCAGCGAGC TGATTCGTGT CGAGGTCGAA
GGCGACGGCA ACCTGAAGCC GGGCGCGAAG GCACGCGATG CCGAAGCGGA TGCGACGCCG
CGTCCGGCGG CGGTCGACAC GCCTGCCAGG TCATCGAAAG TCACCGAAGC CACCGAAGCG
CACGACGCGT CGAAGGCAGC ACGTCACACC GCTGAGCGTG CACCGGCCGA GCCGCGTCGC
GCGGAACACG CGGCGCCGCC GCGCGCGGCC TTCGCGCCCG GCGAACGGCC GCTCGCGTCG
CCGGCGGTGC GCCAGCGCGC CTGGGACATG GGCATCGAGC TGCGCTACGT GCGCGGCACC
GGCGAGGCCG GCCGGATCCT GCATGCGGAC CTCGATGCGT ACGCACGCAC GGGCGGCACG
GCGGCGGGTG GCGCGCAAGC GCGCGGCTAC GACGAGCGCA ACGATGAAAC GGAGGTGCCG
GTGATCGGCC TGCGCCGCGC CATCGCGCGC AAGATGCAGG AGGCGAAGCG CCGCATTCCG
CACTTCAGCT ACGTCGAGGA GATCGACGTC ACCGAGCTCG AATCGCTGCG CGGCGAGCTG
AACCGACGCC ACGGCGACGC GCGTGGCCGG CTCACGCCGC TGCCGCTGCT GATCCGCGCG
ATGGTGATCG CGCTGCGCGA CTTCCCGCAG ATCAACGCGC GCTACGACGA CGAAGCCGCT
GTCGTCACGC GTTACGGCGC GGTGCACATG GGCGTCGCGA CGCAGACGGA CAGCGGCCTC
ACGGTGCCGG TGCTGCGTCA TGCGGAAGCG CGCGACGTGT GGTCGATCTC GGCGGAAATC
GCGCGGCTCG CCGACGCCGT GCGCGCGAAC CGCGCGCAGC GCGACGAGCT GACCGGCTCG
ACGATCACGA TCTCGAGCCT CGGCGCGCTC GGCGGCATCA TGTCGACGCC GGTCATCAAC
CATCCGGAGG TCGGCATCGT CGGCGTGAAC CGGATCGTCG AGCGGCCGAT GATCCGCGAC
GGCGCGATCG TCGCGCGCAA GCTGATGAAC CTGTCGTCGT CGTTCGACCA TCGCGTCGTC
GACGGCGCGG ACGCGGCCGA ATTCATCCAG GCCGTGCGCG GGTTGCTCGA GCGCCCGGCG
CTGCTGTTCG TGGAGTGA
|
|---|
| Protein sequence | MGIHVIKMPD IGEGIAEVEL VAWHVEVGQT IKEDQPLADV MTDKAAVEIP SPVAGKVLAL
GGRIGEMMAV GSELIRVEVE GDGNLKPGAK ARDAEADATP RPAAVDTPAR SSKVTEATEA
HDASKAARHT AERAPAEPRR AEHAAPPRAA FAPGERPLAS PAVRQRAWDM GIELRYVRGT
GEAGRILHAD LDAYARTGGT AAGGAQARGY DERNDETEVP VIGLRRAIAR KMQEAKRRIP
HFSYVEEIDV TELESLRGEL NRRHGDARGR LTPLPLLIRA MVIALRDFPQ INARYDDEAA
VVTRYGAVHM GVATQTDSGL TVPVLRHAEA RDVWSISAEI ARLADAVRAN RAQRDELTGS
TITISSLGAL GGIMSTPVIN HPEVGIVGVN RIVERPMIRD GAIVARKLMN LSSSFDHRVV
DGADAAEFIQ AVRGLLERPA LLFVE
|
|---|
| |