| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1101 |
|---|
| Symbol | |
|---|
| ID | 6177104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1213570 |
|---|
| End bp | 1214850 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641680857 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_001807808 |
|---|
| Protein GI | 172060156 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCCT CCCGCGAGCT CTCGCTCGAA TCCCTGCTCG AACGCCTGAC GCCGACGCCC
AGCGGCTGGA TCGCCACGTA TCGCGAGACG ACGCTGCGCA GCGTGTTCCA ACCCGTGCTG
TCGATCACGC ACAAACGCGT GGTCGGCTAC GAAGCGCTGC TGCGCGTCGT GGACGCGAAC
GGCACGCTGG TGTCGCCGGT CGCACTGTTC GACAAGACGC GCGCGGTCGC CGACGCGTTG
CTGCTCGACC GGCTCGCGCG CTGCCTGCAT ACGGCCAACT TCGTCGCGCA AGGCATCGGC
GACGGCTGGC TGTTCTTGAA CGTGACGCCG CGCGTGCTCG ATTCGGGCCT CGTGCAGCGT
GAATTCGTCG AGGCGCTGTG CCGGCATTTC GCACTCCCGC CGAACCGCAT CGTGCTGGAA
GTCGTCGAGC AGCCGTCGCG CGACGAAGCC GCGCTCGCCC GCACGATCGA CATGATCCAG
CATCGCGACT TCCTGATCGC GATCGACGAT TTCGGCACCG GATTCTCGAA TTTCGACCGC
GTGTGGCGCG CACGGCCGGA TATCGTGAAG CTCGACCGCT CGCTCGTCGA ACGTGCGACC
GGGTCGGGCG AGGATCGCCG CATCATGCAT CACCTGGTAT CGATGCTCCA CCAGGCCGGC
GCGATGGTGC TCGCCGAGGG TGTCGAAAAC GACGACGCGC TGCAGGCGCT GATGGACGCC
GATATCGATT TCGTCCAGGG CTTCCAGTTC GGCCAGCCCG ATGGATCGAT CGCACATGCG
AGCGCCGCGG CGCCCGCGAT GCTCGATGCC GCGTGGCAGC GTTTCATCGC GCAGCGGCAT
ATGCCGGGGA GCGCCGAGCA GCCCGGCTTC GACGCGATCG AGCGGCTCGT GCTCGCCGGC
GCGGCCGCGT TTTCCGCGAG CGGCAACCTG AACGACGCCG CGCAGCGCGT ATTCGCGGTG
CCGGCCGCGC GCCGCGTGTT CGTCACCGAC GAGATCGGCG AACAGTTCCT GCCGTCGATC
GGCGCGCCCG CCGAGGACGG CCAGGCGGGC GGCACCCGGC TCTCGCCGCT GTTTCCGGAA
ACACACAGCA ACTGGTCGCG GCGCCCCTAC TTCCAGCGCG CGATCGCGGC GCCGGGCCGC
GTCGCGCTGA TGGGCCCGCA CTTCTCGCTG ACCGAAGGCC GCGACTGCTA TACCGCGGCG
GTGGCGATTC GCGCGCAAAG CCGCCTCGTC GTGTTCTGCG TCGACTTCGT GCTGGACAGC
GCGGGCACCG TGATGCGGTA G
|
|---|
| Protein sequence | MKASRELSLE SLLERLTPTP SGWIATYRET TLRSVFQPVL SITHKRVVGY EALLRVVDAN
GTLVSPVALF DKTRAVADAL LLDRLARCLH TANFVAQGIG DGWLFLNVTP RVLDSGLVQR
EFVEALCRHF ALPPNRIVLE VVEQPSRDEA ALARTIDMIQ HRDFLIAIDD FGTGFSNFDR
VWRARPDIVK LDRSLVERAT GSGEDRRIMH HLVSMLHQAG AMVLAEGVEN DDALQALMDA
DIDFVQGFQF GQPDGSIAHA SAAAPAMLDA AWQRFIAQRH MPGSAEQPGF DAIERLVLAG
AAAFSASGNL NDAAQRVFAV PAARRVFVTD EIGEQFLPSI GAPAEDGQAG GTRLSPLFPE
THSNWSRRPY FQRAIAAPGR VALMGPHFSL TEGRDCYTAA VAIRAQSRLV VFCVDFVLDS
AGTVMR
|
|---|
| |