| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1098 |
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| Symbol | |
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| ID | 6177732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1207095 |
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| End bp | 1210799 |
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| Gene Length | 3705 bp |
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| Protein Length | 1234 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641680854 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001807805 |
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| Protein GI | 172060153 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0918971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCG CATCGCAGCC GCAGGCGGCG CTCGAACTCG ACGTGTTCGC GTGTCCGCTC
GGCGGCGTCA ACCAGATCGA GGCGTCGGCC GGTACCGGCA AGACGTGGAA CATCTGCGCG
CTGTACGTGC GCCTGCTGCT CGAGAAGGAT CTCGGCGCGG ACGAAATCCT CGTCGTGACC
TTCACGAAGG CCGCGACCGC CGAACTGCAC GAGCGGATCC GCGGGCGGCT CGCGCAGCTC
GCGCATGCAC TCGATACTGG TGACGACGGC GGCGATCCGT TCGTCGCGCG CCTGCTCGAG
ACGACACTCG GCGACGCCGG CACGCTCGAC CCCGAGACCG CCGCGAAGCG GATCCGGCGC
GCGTTGCGTG CCTTCGACCA GGCGGCGATC CACACGATCC ACGCGTTCTG CCAGCGTGCG
CTGCAGGAAG CGCCGTTCGC GGCCGCGATG CCATTCGCGT TCGACATGCA GGCCGACGAT
GCGGCGCTGC GCTTCGAACT CGCGGCGGAC TTCTGGCGCA CGCGCGTCGA ACCGATGGCC
GCGCGCTGGC CCGGCTTCGC GACGTGGCTC GTCGATTCGG GCGCGGGCCC GGCCGCGCTC
GACGCCCAGC TTGCGCGCCG GTTGAAGAAG CCGCTCGCCG CGCTGCGCTG GGACGGCGTC
GTCGAACCGG ACGAATCGGC GGAGGCCGCT GCCGCCGAGT GCTTTGCGGA GGCGGCGCGG
CTGTGGGCCG ACGAGCGCGA TGCGATCGAC GCGTTGCTGC GCACTGCGCA GCCCGCGCTC
AACCAGCGCT CGCACAAGCC CGACGCGCTC GCCGATGCGC TCGCCGCGTG GAGCGCGCAT
TTCGCGCAGG GCGATGCCGC GGCCGCGCTG CCGAAGGCGG CGCTCAAGCT CACGCGCACC
GCGCTCGCGA AGGCGACGAA AAAGGGCGGC GTGACGCCCG AGCACGCGTT CTTCGACGTG
GCCGACGCGC TCGAAGCGGC GGTGGCCGCG GCCGAGGCCA CGCAGCGCGC CCGCTGGCTC
GCGCTGATCG CCGACTGGCT CGACACCGCG CCGGGCGAGC TGGCCGAACG CAAGCGTACG
CGGCGCGTCG TGTCGTTCGA CGACCTGCTC GCGAACCTGT ATCACGCGCT GCATGCGCAC
CCGTGGCTCG CCGAGACGCT GCGCGCGCGC TATCCGGCCG CGCTGATCGA CGAATTCCAG
GATACCGACC CGCTGCAGTT CGCGATCTTC AACCGGATCT TCGCGCCGGG CGGGCCGCTC
TTTCTCGTCG GGGACCCGAA GCAGGCGATC TACAGCTTCC GCGCGGCGGA TCTGCATACC
TATCTCGCCG CACGGGCAAG CGCGAGCGCG TGCTATACGC TCGCGGTCAA CCAGCGCTCG
ACGCCGGCGA TCGTCGACGC GTGCAACCGC TTCTTCATGT CGAACCCGCG CGCGTTCGTG
CTCGACGGGC TCGACTATTA CGCGGTGCGC GCCGGCACGC GCGTGCGCGC ACCGTTCGTC
GACGCAACGG ATCCGGGCCC GGCCGGCGAT TTCCGGATCT GGTCGCTGCC GGGCGGCGAT
GGCACGCTGC TCAAGCGCGA TGCGCAGGCG CAGGCCGCCC AGGCGTGCGC GGCCGAGATT
GCCCGGCTGA TGCGCGGCGC GCGCGAGGGC CATGCGCGGC TCGGCGATAC GCCGCTGTCG
CCGGGCGACA TCGCAGTGCT GGTGCAGACA CACCGGCAGG GCAGTCTCGT GAAGCGCGTG
CTCGCCACGT GGGGTATCGG CAGCGTCGAG CTCGCGCAGG CGTCGGTGTT TTCGACCGGA
GATGCGGAGC AGCTCGAGCG CGTGCTGGCG GCGATCGACG CGCCGGGCGA CTTGCGGCGC
TTGCGTTCGG CGCTGGCCGC CGACTGGTTC GGCCTCGATG CCGGTGCGCT GTGGCGGATG
GAGCAGGGCG ACGGCGACGC GTCGCGCGAA GCGGCTGACA GCGCGGACGC GATGAGCTGG
GTCGAGCGCT TCTCGCGCTA TCGGCTGCTG TGGCGCGAAC GCGGCTTCGC GGTGATGTGG
CGCACGTTCA CGCGCGAGCT GCGCATCGCC GAGCGGCTGA TGGCGGGTGC GGACGGCGAG
CGCCGCGTGA CCGACATCAA CCATCTGGCC GAACTGACGC AGGCGCGCGC GTCCGCGCAG
CCGGGCATCG CACCGACGCT GCGCTGGCTC GCCGCGCAAC GGCTCGACGG TGGCGGCGAG
GAAGCCCAGC TGCGCCTGGA ATCCGATCGC AACCTCGTGC AGATCGTGAC CGTGCACAAG
TCGAAGGGCC TCGAATACGC GGTCGTGTTC TGTCCGTTCC TGAACGACGG CGGGCTGCGC
GAGCCGCCCG CGTCGGGGTT GCCGGACGCG CGCGAGTATC ACGACGACGC GGGCGACGCC
GTGCTGCATT ACGGGTGCGA CGACGAAGCC GCCGAGCATG CCGCGCGCCA GGCGCTGCGC
GAACAGGCGG CGGAACGCGC GCGGCTCGTC TACGTGGCGC TCACGCGCGC GGTGTATCGG
TGCTATCTCG TCGCCGGGCC TTATCTGTCG TCGCGCTCGA CCCGCGAGGC ACGGCGCAGC
GTGCTGAACT GGCTCGTGGC CGGCGCCGGC CAGTCGTTCG ACGCTTGGCT CGACGAGCCG
CCCGACGAAG CGGTGCTCGA CTCGGCGTGG CAAGCACTGG CCGGCGGCCC GGTGAGCGTT
GCACCGTTGC CGGTGCCGGC TCGGCGCGAA CGGCTCGCGG CCGGCCACGA TGCAACGCAG
ACGCTCGCGG CGCGCCATGC GACGCGCGTG CTGCGCGACG CGTGGCGGAT GGCGAGCTTC
AGTTCGCTGA CGTCGTCGAT GGCACGCGAG GAGGCGGGCG TCGCGGTCGT GCCGGACGAC
GAGCTTCGGC CTGATCACGA TGCGCTTGCC GCCGTGGCGC CGGATGGTGC GTTCGTCGCG
GCCGACACGG TTGCATCCGA GCCGCCGGAC GACGACATCC TCCGGTTTCC GCGCGGTGCG
GCAGCGGGCG AGTGCCTGCA CCGCCTGTTC GAACTCAGCC GCTTCACGGA GCCCGATTCG
TGGTACCAGG CAGCGCTCGG CGCGCTGCAC GACCGGCCGG TCGAGGCCGA GCCCGAACTC
GCGACGCGTC TGCCGGCGAT GATGGCGCGG CTCGTCGACG ATGTCGTGCG TACGGAGCTC
GTGCCGGGCA TGCGGCTTGC GGATCTCGAC CCAACCAGGC GGCTCGACGA AATGGGTTTC
CTGTTCCCGG CGCCGTCGCT CGAGCTGGGC GCGCTGCGCC GGCTGCTGGT GGCGCACGGC
TATCCGGACG TTGCGCTCGA CTCGGGCATG CTCGCCGGTT TCATCAAGGG TTTCATCGAC
ATGATCCTCG AACACGACGG CCGGTTCTGG ATCGTCGACT GGAAGTCGAA CCATCTCGGC
AATACGCCGG ATGCGTATGG CCCGCGCGCG CTCGACGTCG CGATGTCCGA TCACGCGTAT
CACCTGCAGG CGCTGCTCTA TACGGTCGCG CTGCATCGCT ATCTGCGCGG GCGGCTGCCC
GACTACGACT ACGACACGCA TATGGCGGGC TACCTGTACC TGTTCGTGCG TGGCGTGCGG
CCCGACTGGC GCAGCGGCGG CGAACCGGCC GGCGTGCATG CGCGGCGGCC CGCGCGCGAA
CTCGTCGACG CACTCGACCG GATGATGGAA GGGGGCCGCG CATGA
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| Protein sequence | MSAASQPQAA LELDVFACPL GGVNQIEASA GTGKTWNICA LYVRLLLEKD LGADEILVVT
FTKAATAELH ERIRGRLAQL AHALDTGDDG GDPFVARLLE TTLGDAGTLD PETAAKRIRR
ALRAFDQAAI HTIHAFCQRA LQEAPFAAAM PFAFDMQADD AALRFELAAD FWRTRVEPMA
ARWPGFATWL VDSGAGPAAL DAQLARRLKK PLAALRWDGV VEPDESAEAA AAECFAEAAR
LWADERDAID ALLRTAQPAL NQRSHKPDAL ADALAAWSAH FAQGDAAAAL PKAALKLTRT
ALAKATKKGG VTPEHAFFDV ADALEAAVAA AEATQRARWL ALIADWLDTA PGELAERKRT
RRVVSFDDLL ANLYHALHAH PWLAETLRAR YPAALIDEFQ DTDPLQFAIF NRIFAPGGPL
FLVGDPKQAI YSFRAADLHT YLAARASASA CYTLAVNQRS TPAIVDACNR FFMSNPRAFV
LDGLDYYAVR AGTRVRAPFV DATDPGPAGD FRIWSLPGGD GTLLKRDAQA QAAQACAAEI
ARLMRGAREG HARLGDTPLS PGDIAVLVQT HRQGSLVKRV LATWGIGSVE LAQASVFSTG
DAEQLERVLA AIDAPGDLRR LRSALAADWF GLDAGALWRM EQGDGDASRE AADSADAMSW
VERFSRYRLL WRERGFAVMW RTFTRELRIA ERLMAGADGE RRVTDINHLA ELTQARASAQ
PGIAPTLRWL AAQRLDGGGE EAQLRLESDR NLVQIVTVHK SKGLEYAVVF CPFLNDGGLR
EPPASGLPDA REYHDDAGDA VLHYGCDDEA AEHAARQALR EQAAERARLV YVALTRAVYR
CYLVAGPYLS SRSTREARRS VLNWLVAGAG QSFDAWLDEP PDEAVLDSAW QALAGGPVSV
APLPVPARRE RLAAGHDATQ TLAARHATRV LRDAWRMASF SSLTSSMARE EAGVAVVPDD
ELRPDHDALA AVAPDGAFVA ADTVASEPPD DDILRFPRGA AAGECLHRLF ELSRFTEPDS
WYQAALGALH DRPVEAEPEL ATRLPAMMAR LVDDVVRTEL VPGMRLADLD PTRRLDEMGF
LFPAPSLELG ALRRLLVAHG YPDVALDSGM LAGFIKGFID MILEHDGRFW IVDWKSNHLG
NTPDAYGPRA LDVAMSDHAY HLQALLYTVA LHRYLRGRLP DYDYDTHMAG YLYLFVRGVR
PDWRSGGEPA GVHARRPARE LVDALDRMME GGRA
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