| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1093 |
|---|
| Symbol | |
|---|
| ID | 6179074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1198009 |
|---|
| End bp | 1199052 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641680849 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001807800 |
|---|
| Protein GI | 172060148 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.39155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAATC CGCGCACCCG CCTGTTGCCG CTCGTCGGCG CCCTCGCCGT TGCCGTCGCC
GCATTCGCGC CGCTGGCCCA CGCCGCCGAG GAAGTGAGCC TGTACACCAC CCGCGAACCG
AAGCTGATCC AGCCGCTGAT CGACGCGTTC ACGCAGCAGA GCGGCGTCAA GGTCAACACG
GTATTCGTGA AGGACGGCCT GCTCGAGCGT GTGAAGGCGG AAGGCGCGCA GTCGCCGGCC
GACGTGCTGA TGACGGTCGA CATCGGCAAC CTGCTCGACC TCGTCGACGG CGGGCTCGCG
CAACCGGTGC GCTCGAAGGT GCTCGACGAC GCGATTCCCG CGAACCTGCG CGGCGCGCAG
GGCGACTGGT ACGCGCTGTC GCTGCGCGAT CGCGTGCTGT ATGTGGAGAA GGACCTGAAG
GTCGACGCGT TCCGCTACGA GGATCTCGCC GATCCGAAAT GGAAGGGCAA GGTCTGCATC
CGCTCGGGGC AGCATCCGTA CAACACGGCG CTCGTCGCGG CGATGATCGC GCACGACGGC
GAAGCCGCGA CCGAAAAGTG GCTGCGCGGC GTGAAGGCGA ACCTCGCGCG CAAGGCGACG
GGCGGCGACC GCGACGTCGC GCGCGACATT CTCGGCGGGA TCTGCGACGT GGGCCTCGCC
AACGCGTACT ACGTGGGTCA CATGAAGAAC GCGGAGCCGG GCACCGATGC GCGCAAGTGG
GGCGACGCGA TCAAGGTCGT GCGGCCGACG TTCGCGAACG CGAAGAGCGG CGGCACGCAC
GTCAACATCA GCGGCGCGAC GGTCGCGAAG CACGCGCCGA ACAAGGCCAA CGCGGTGAAG
CTGCTCGAAT ACCTCGTGTC GCCGCAAGCG CAGGCGCTCT ATGCGCAGGC GAACTACGAA
TACCCGGTGC GCGCGAACGT GAAGCTCGAT CCGGTGATCG CGAGCTTCGG CACGCTGAAG
GTCGATCCGC TGCCGCTGGC CGACATCGCG AAGCATCGCA AGGCGGCCAG CCAGCTCGTC
GACAAGGTCG GCTTTGACAA CTGA
|
|---|
| Protein sequence | MSNPRTRLLP LVGALAVAVA AFAPLAHAAE EVSLYTTREP KLIQPLIDAF TQQSGVKVNT
VFVKDGLLER VKAEGAQSPA DVLMTVDIGN LLDLVDGGLA QPVRSKVLDD AIPANLRGAQ
GDWYALSLRD RVLYVEKDLK VDAFRYEDLA DPKWKGKVCI RSGQHPYNTA LVAAMIAHDG
EAATEKWLRG VKANLARKAT GGDRDVARDI LGGICDVGLA NAYYVGHMKN AEPGTDARKW
GDAIKVVRPT FANAKSGGTH VNISGATVAK HAPNKANAVK LLEYLVSPQA QALYAQANYE
YPVRANVKLD PVIASFGTLK VDPLPLADIA KHRKAASQLV DKVGFDN
|
|---|
| |