| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1071 |
|---|
| Symbol | |
|---|
| ID | 6176939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1168913 |
|---|
| End bp | 1169542 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641680827 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001807778 |
|---|
| Protein GI | 172060126 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.745456 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGA AGGTACTGCT GATTGGTGCG ACCGGCCGCA CGGGCCAGGC CTGCGCGGAT
CTGCTGCTCA AGCAGCCGGA ATTCGAGGTG ACAGCGCTGG TGCGCCGGCA CGGCTATGCG
CTGCCGGGCG CGAAGGTCGT CGAGGCCGAT CTGACGGGCG ATTTCTCGCA CGCATTCCAG
GGCATCACGC ACGTGATCTA CGCGGCCGGT TCGGCCGAAT CGGAAGGCGC CGCCGAAGAG
GAGCAGATCG ACCGCGACGC GGTCGCGCGC GCGGCCGAGC ATGCGCTCGC CTACAACGTG
CAGAAGCTGG TCGTGATCAG TTCGCTGACC GCGTACTGGC CGGAGCGCAG CGGCGACGCG
CTGCGCCACT ACTCGCAGAT GAAGCGCGAA GGCGACGAGC GCGTGATCGC ATCGGATATC
GACTACGTGA TCCTGCGCCC CGGCCCGCTC TCGGACAGCC CGGGCGTCGG CAAGATCGCA
CTGACCGAGG AGCCGCTGAA CGCGGCGCCG CCGGTGTCGC GCCAGGATGT CGCATGGGCC
GCGATCGAGG CGATCAAGCT GGGCATTTCG CGCAAGGTCA TCGGCTTCGT CGGCGGCGGC
GTGCCGATCG AACAGGCATT GCGCGCGTAA
|
|---|
| Protein sequence | MTTKVLLIGA TGRTGQACAD LLLKQPEFEV TALVRRHGYA LPGAKVVEAD LTGDFSHAFQ
GITHVIYAAG SAESEGAAEE EQIDRDAVAR AAEHALAYNV QKLVVISSLT AYWPERSGDA
LRHYSQMKRE GDERVIASDI DYVILRPGPL SDSPGVGKIA LTEEPLNAAP PVSRQDVAWA
AIEAIKLGIS RKVIGFVGGG VPIEQALRA
|
|---|
| |