Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1069 |
Symbol | |
ID | 6176722 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 1166230 |
End bp | 1168062 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641680825 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001807776 |
Protein GI | 219363750 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGCCA ACAGGAAACA GACGCCACGC AAGGGCTCCT GGCGCAATGC CTTGCATACG CTGCGCCGCT TCGCCTGGTC GGGCGGCGCG CTGATGCCTG CGCGCGCCGG CGCGCCGCGC CGCGACGACA CCGTGCGCAA CTGGCTGGAA CAGACGGTCG GCACGGTGGA TTTCCTCGCC CATGTCGACC GCGAGCTGCG CTTTCTGTAC GTATCCGACG CGAGCCTGCG TTTCATCGGT TATCACCGCG ACTACCTGCA CACGCTGACG CTGCGCGACC TGATCGCCGA ACAGGATACC GCGACGCTCG AAGGCCTGCT CGCGCGTGCC GCGCGTTCCG GCCAGGTCGA GAAGGCGACG ATCTGCATCG TCAAGTCGCT TACCTACCCG CTCGACGTCG AGATCCGCGC GTTCAAGAGC CGTCACCACG GCGTCGACGG CTTCGCGATC GCGGCGTTCG ACGTGACGGC CTGGCGGGCG CTCGAAGCGC GTCTGACGTA CGAGATGCAC CACGATCCGA TGACGGGGCT CGACAACCTG TCCGCGCTCG TGCCCGCGCT GATGCGCGCG CAGCAGGCGG CCGACGAGAG CGGCACGTGC GCGGCGCTGC TGCTGCTCGA CCTCGACGAT TACCAGCGCA TCAACCGCGC GCTCGGCTAC GACGCCGGCG ACACGCTGCT GCGCGACACC GCGCAGCGGC TGCGGGCGCT CGTCGCACCG GGCGAGCAGC TCGCGCGGGT CGCGAGCGAC AAGTTCGCGG TGGTGTTGAC CGCGCCGAAC CGCGCCCGCG CGAGCGACGC CGCTGACGCG CTCGCGCGCC GGCTGCAGGC CGCGGTGCGC GAACCTTACG TGTTTCAGGG ACAGACCGTG CACTTGTCCG CGAGCATCGG CATCGCGCTG TACCCGGACG AACGTGCGGC GCCGCATCGC GCGCAGCACC ACAGCCCGCT GCTGCGCCGC GCCGACCATG CGCTCGCGCA GGCGAAGGCG TCGGGCGGCA ATGCGCTCGC GTTTCACGAG CCGGTCGACG ACCCGGCCGA CGCGGAGCGG CTCAAGCTCG AGGCCGACCT GTACGACGGC GTGCGCAACG GCGAGTTCTC GCTCCACTTC CAGCCGATCA CGCGCAGCCA GTCGGGCGCG GTGGACGGCG TCGAGGCGCT GATCCGCTGG CGGCATCCGG TGCACGGCCT CGTGCCGCCG GCCACCTTCA TTCCGCTCGC CGAATCGATC GGCCTGATCA ACTATCTCGG CAACTGGGTG CTCAAGGCTG CGTGCATGCA GCTCGTCGCG TGGGACCGCC AGGGGCTCGC GCTGCAGTAC GTGGCGGTCA ACGTGTCGCC GCAGCAGTTC CGCGACCCGC GCTTCACACA GAGCGTGCGC GAGGCGATCG CGCTGACGGG CATCGACCCG CGGCGCATCG TGCTCGAAAT CACCGAAAGC CTGCTGATGC ACGATCCCGC GCAGGCGAAG ATGCTGCTCG AGGAGCTGAC CGAGCTCGGC ATCCGCTTCG CGATCGACGA TTTCGGCACC GGCTATTCGA GCCTCGCGTA CCTGCAGCGC TTCCCGCTCG CGAAGCTGAA GATCGACCGC AGCTTCGTCG AGAACCTGCT GACGTCGCGC AACGATCGCG CGATCGTGTC GGCGGTGGTC GGCCTCGCGC AGACGCTCGA TCTCGAGCTC GTCGCGGAAG GCGTCGAGAC CGAGGCGCAG CGCGAACTGC TGACCGAAAT GGGCTGCAAC CACATCCAGG GCTGGCTCGT GTGCCAGGCG CTGCCGTCCG AGGAGCTCGC GCGGCGCTTC GAGGCGCAGC AGTTGCGCCT GCACGCCGCC TGA
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Protein sequence | MEANRKQTPR KGSWRNALHT LRRFAWSGGA LMPARAGAPR RDDTVRNWLE QTVGTVDFLA HVDRELRFLY VSDASLRFIG YHRDYLHTLT LRDLIAEQDT ATLEGLLARA ARSGQVEKAT ICIVKSLTYP LDVEIRAFKS RHHGVDGFAI AAFDVTAWRA LEARLTYEMH HDPMTGLDNL SALVPALMRA QQAADESGTC AALLLLDLDD YQRINRALGY DAGDTLLRDT AQRLRALVAP GEQLARVASD KFAVVLTAPN RARASDAADA LARRLQAAVR EPYVFQGQTV HLSASIGIAL YPDERAAPHR AQHHSPLLRR ADHALAQAKA SGGNALAFHE PVDDPADAER LKLEADLYDG VRNGEFSLHF QPITRSQSGA VDGVEALIRW RHPVHGLVPP ATFIPLAESI GLINYLGNWV LKAACMQLVA WDRQGLALQY VAVNVSPQQF RDPRFTQSVR EAIALTGIDP RRIVLEITES LLMHDPAQAK MLLEELTELG IRFAIDDFGT GYSSLAYLQR FPLAKLKIDR SFVENLLTSR NDRAIVSAVV GLAQTLDLEL VAEGVETEAQ RELLTEMGCN HIQGWLVCQA LPSEELARRF EAQQLRLHAA
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