| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1041 |
|---|
| Symbol | |
|---|
| ID | 6177071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1130670 |
|---|
| End bp | 1132661 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641680797 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001807748 |
|---|
| Protein GI | 172060096 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.645663 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGATT TTATCTCAAA ATCGCTCGCG AGCCTCTGGC CCAGGCAAGA TTCGCGCAGC
GCGACGCAGG CCTTGTTTAC AATGCCGGAT TATTCAGTCC GAGCGCATGC CGGCATGCGA
TCCAGCCGCC ACGCTCAATC ACCGAATCAC CGCACGCATA TTTTGGAATC TCTTACCCCC
GCCCAGCGCA ACGCCCACAA CGCGAAGCTC TCGAGCTACG CGCACCGGCC GATCGCGTTC
CTGTTCCGCT ACATCCGCCT GCATCCCGTT GCTCACCTCG TCGTGCTCTG CAGCGTGCTG
GCTGCCGTCG GCTGCGCGCT CGGCTCGCAA TACGCGATCA AGCACCTGAT CGACGTGCTG
GCGACCGGGC GCCATCATCC GGGGCCGCTG TGGAGTGCGT TCGCGCTGCT CGTCGGACTG
ATCGCGGCCG ACAACCTGCT GTGGCGGGTC GGCGGCTGGG CCGCCGCGCA CACGTTCGTC
GCGGTCACCG GCGACCTGCG GCGCGACCTG TTCCAGTACC TGATCGGCCA TTCGCCGACC
TACTACTCGG AAAAGCAGCC GGGCACGCTC GCGAGCCGCA TCACGGCCAC GTCGAACGCC
GTCTATACGT CGGAGAACAC GATGGCGTGG AACGTGCTGC CGCCGTGCAT CGCGGTGATG
GGCGCGATCC TGATGATCAT CGTCGTCAAT CCGCTGATGG CCGCCGGCCT GCTCGGCTGC
TCGGCCGTGC TGTCCATCAT CCTGTTCAAG CTGGCCGGGC GCGGCTCGGC GCGCCACCAT
GCATTCGCGG CGAAGGCTGC GGCCGTCGAC GGCGAGCTCG TCGACGTGAT CGGAAACATG
GGGCTCGTGC GTGCGTTCGG GATGACGGTG CGCGAACAGA AGCGCTTCAG CGCAACGATC
AAGGCGGAGA TGGACGCGCG CCAGCAGAGC CTGTTCTATC TCGAGAAGCT GCGGCTGCTG
CATGCGGTGA TCACCGCGAT GCTGTCGGCC GGCCTGCTCG GCTGGGCGCT GTGGTTGTGG
GATCAGGGCC GCGCGACGTC GGGCGATATC GTGCTCGTCA GCTCGCTCGG CTTCACGATC
CTGCACGGCA CGCGCGACCT TGCGGTCGCG CTCGTCGACG TCACGCAGCA CGTCGCGCGC
CTGTCCGAAG CCGTGAAGAC GCTGCTCGAA CCGCACGGGA TGCCCGACCA CTCCGACGCG
AAGCCGCTGG CGGCCACCGG CGGGCGCGTC GACTTCGAGC GCGTGACGTT CGCGTATCCG
CACCGCCGCG CGATCCTCGA CCACTTCGAC CTCCATATCG AGCCGGGCCA GCGTGTCGGC
CTGATCGGCA AGTCGGGCGC CGGCAAGTCG ACCGTGCTCG CGCTGCTGCA GCGCTTCTAC
GACACGCAGG ACGGCGTCGT GAAGGTCGAC GGCCAGGACG TGAAGGTGAT CACGCAGGAC
AGCCTGCGCC ATGCGATCGC GCTCGTGCCG CAGGACATCT CGCTGCTGCA CCGGACGATC
TACGACAACA TCGCCTATGG CCGCCCCGAC GCGACCCGCG AGGAAGTGCT CGCCGCCGCG
CGCGACGCGC GCTGCGCGGA GTTCATCGAA GCGATGCCGG AAGGCTATGA CACGATCGTC
GGCGACCGCG GCGTCAAGCT GTCGGGCGGC CAGCGCCAGC GCATCGCGAT CGCGCGCGCG
ATCCTGAAGG ATGCGCCGAT CCTGCTGCTC GACGAAGCGA CGTCCGCACT CGACAGCTCG
TCCGAGGAAG CGATCCAGAG CGCGCTCGAC CGCCTGATGG TCGGCCGCAC GGTGATCGCG
ATCGCGCACC GGCTGTCGAC GCTGCGCAAC TTCGACCGGA TCATCGTGAT GAGCAACGGC
AAGGTGATCG ACGACGGCAG CCCCGACGTG CTGCGCAACC GTCCCGGTCT GTACCGCGAC
CTGCTCGCGA AGCAGCACGG CCGCCATCAC GCGCCCGACG GCACCGCGCC GACCGGCGAA
CGCGTGGCCT GA
|
|---|
| Protein sequence | MPDFISKSLA SLWPRQDSRS ATQALFTMPD YSVRAHAGMR SSRHAQSPNH RTHILESLTP
AQRNAHNAKL SSYAHRPIAF LFRYIRLHPV AHLVVLCSVL AAVGCALGSQ YAIKHLIDVL
ATGRHHPGPL WSAFALLVGL IAADNLLWRV GGWAAAHTFV AVTGDLRRDL FQYLIGHSPT
YYSEKQPGTL ASRITATSNA VYTSENTMAW NVLPPCIAVM GAILMIIVVN PLMAAGLLGC
SAVLSIILFK LAGRGSARHH AFAAKAAAVD GELVDVIGNM GLVRAFGMTV REQKRFSATI
KAEMDARQQS LFYLEKLRLL HAVITAMLSA GLLGWALWLW DQGRATSGDI VLVSSLGFTI
LHGTRDLAVA LVDVTQHVAR LSEAVKTLLE PHGMPDHSDA KPLAATGGRV DFERVTFAYP
HRRAILDHFD LHIEPGQRVG LIGKSGAGKS TVLALLQRFY DTQDGVVKVD GQDVKVITQD
SLRHAIALVP QDISLLHRTI YDNIAYGRPD ATREEVLAAA RDARCAEFIE AMPEGYDTIV
GDRGVKLSGG QRQRIAIARA ILKDAPILLL DEATSALDSS SEEAIQSALD RLMVGRTVIA
IAHRLSTLRN FDRIIVMSNG KVIDDGSPDV LRNRPGLYRD LLAKQHGRHH APDGTAPTGE
RVA
|
|---|
| |