Gene BamMC406_1010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_1010 
Symbol 
ID6178403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp1099544 
End bp1101043 
Gene Length1500 bp 
Protein Length499 aa 
Translation table11 
GC content69% 
IMG OID641680762 
Productprotease Do 
Protein accessionYP_001807717 
Protein GI172060065 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.644369 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAAAC TCACGCTGCG CAACGTGTTC GCGGCGGCGG TGCTGTGTGC CTGCCTGCCC 
CTCATCCCGC ATACCGCGGT GGCGGCCACG CCGCCCGCCG CCAGCCTTCC CGACTTCGCC
GATCTGGTCG AAAAGGTCGG GCCGGCCGTC GTGAACATCC GGACCACCGC GAACGTGCCG
ATTCCCGGCC CGCGCGGTGC GCTCCCGCCG GGCTTCGACA ACGGCGACAT GTCGGAATTC
TTCCGGCGCT TCTTCGGCAT TCCGCTGCCG CAGGCGCCCG GCAACGGCGG CGGCAACGGC
AATCCGAAGA ACGCGCCGGC GCCGGACAAT CCGCCCGACG CCGAGCAGAA CCGCGGCGTC
GGTTCGGGCT TCATCGTGTC GGCGGACGGC TACGTGATGA CGAACGCGCA CGTCGTCGAC
GATGCGGACA CCATCTACGT GACGCTGACC GACAAGCGCG AATTCAAGGC GAAGCTGATC
GGCGTCGACG ACCGCACGGA CGTCGCGGTG GTCAAGATCC AGGCGTCGAA CCTGCCGGTC
GTCGCGATCG GCGATTCGAA CAAGGTGCGC GTCGGCGAGT GGGTCGTCGC GATCGGCTCG
CCGTTCGGCC TCGACAACAC AGTGACCGCC GGCATCGTGA GCTCGAAGAG CCGCAACACG
GGCGACTACC TGCCGTTCAT CCAGACCGAC GTCGCGGTGA ACCCCGGCAA CTCGGGCGGC
CCGCTGATCA ACATGCAGGG CGAGGTGATC GGCATCAACT CGCAGATCTA CAGCCGCACC
GGCGGTTTCA TGGGCATTTC GTTCGCGATC CCGATCGACG AGGCAATGCG CGTGGCCGAC
CAGCTGAAGG CGACCGGCAA GGTCACGCGC GGCCGCATCG CCGTGGCGAT CGGCGAGGTG
ACGAAGGACG TGGCCGACTC GATCGGGCTG CCGAAGGCGG AGGGCGCGCT CGTCAGCAGC
GTCGAGCCGG GTGGTCCGGC CGACAAGGCG GGCATCCAGC CGGGCGACAT CATCCTGAAG
TTCAATGGTC GGCCGGTCGA GACGGCGTCG GATCTGCCGC GCATGGTCGG CGACACGAAA
CCGGGCACGA AGGCGACCGT CAGCGTATGG CGCAAGGGTC AGGCGCGCGA TCTGCCGATC
ACGATCGCCG AGACGCCGGC GGAGACGACG GCGAAGGCCG AGCAGCGCAA GAGCACGCCG
CAGAAGCCGC GCCAGGCAAA CCCGCTCGGC TTGACGGTCA GCGACATTCC GGCGGAGCAG
ATGAAGTCGC TGAAGCTGAA GAACGGCGTG CAGATCGACG CCGTCGACGG CCCGGCCGCC
CGTGCGGGCC TGCAGCGCGG CGACATCGTG CTGCGCGTCG GCGACACCGA CATCACGAGC
GCGAAGCAGT TCGCGGAAGT GACCGCGCAG CTCGATGCGC AGAAGGCGGT CGCGGTGCTC
GTGCGGCGCG GCGACAACAC GCAGTTCGTG CCGGTGCGCC CGCGCCCGAC CCAGAAGTAA
 
Protein sequence
MTKLTLRNVF AAAVLCACLP LIPHTAVAAT PPAASLPDFA DLVEKVGPAV VNIRTTANVP 
IPGPRGALPP GFDNGDMSEF FRRFFGIPLP QAPGNGGGNG NPKNAPAPDN PPDAEQNRGV
GSGFIVSADG YVMTNAHVVD DADTIYVTLT DKREFKAKLI GVDDRTDVAV VKIQASNLPV
VAIGDSNKVR VGEWVVAIGS PFGLDNTVTA GIVSSKSRNT GDYLPFIQTD VAVNPGNSGG
PLINMQGEVI GINSQIYSRT GGFMGISFAI PIDEAMRVAD QLKATGKVTR GRIAVAIGEV
TKDVADSIGL PKAEGALVSS VEPGGPADKA GIQPGDIILK FNGRPVETAS DLPRMVGDTK
PGTKATVSVW RKGQARDLPI TIAETPAETT AKAEQRKSTP QKPRQANPLG LTVSDIPAEQ
MKSLKLKNGV QIDAVDGPAA RAGLQRGDIV LRVGDTDITS AKQFAEVTAQ LDAQKAVAVL
VRRGDNTQFV PVRPRPTQK