| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1010 |
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| Symbol | |
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| ID | 6178403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1099544 |
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| End bp | 1101043 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641680762 |
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| Product | protease Do |
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| Protein accession | YP_001807717 |
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| Protein GI | 172060065 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.644369 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAAAC TCACGCTGCG CAACGTGTTC GCGGCGGCGG TGCTGTGTGC CTGCCTGCCC
CTCATCCCGC ATACCGCGGT GGCGGCCACG CCGCCCGCCG CCAGCCTTCC CGACTTCGCC
GATCTGGTCG AAAAGGTCGG GCCGGCCGTC GTGAACATCC GGACCACCGC GAACGTGCCG
ATTCCCGGCC CGCGCGGTGC GCTCCCGCCG GGCTTCGACA ACGGCGACAT GTCGGAATTC
TTCCGGCGCT TCTTCGGCAT TCCGCTGCCG CAGGCGCCCG GCAACGGCGG CGGCAACGGC
AATCCGAAGA ACGCGCCGGC GCCGGACAAT CCGCCCGACG CCGAGCAGAA CCGCGGCGTC
GGTTCGGGCT TCATCGTGTC GGCGGACGGC TACGTGATGA CGAACGCGCA CGTCGTCGAC
GATGCGGACA CCATCTACGT GACGCTGACC GACAAGCGCG AATTCAAGGC GAAGCTGATC
GGCGTCGACG ACCGCACGGA CGTCGCGGTG GTCAAGATCC AGGCGTCGAA CCTGCCGGTC
GTCGCGATCG GCGATTCGAA CAAGGTGCGC GTCGGCGAGT GGGTCGTCGC GATCGGCTCG
CCGTTCGGCC TCGACAACAC AGTGACCGCC GGCATCGTGA GCTCGAAGAG CCGCAACACG
GGCGACTACC TGCCGTTCAT CCAGACCGAC GTCGCGGTGA ACCCCGGCAA CTCGGGCGGC
CCGCTGATCA ACATGCAGGG CGAGGTGATC GGCATCAACT CGCAGATCTA CAGCCGCACC
GGCGGTTTCA TGGGCATTTC GTTCGCGATC CCGATCGACG AGGCAATGCG CGTGGCCGAC
CAGCTGAAGG CGACCGGCAA GGTCACGCGC GGCCGCATCG CCGTGGCGAT CGGCGAGGTG
ACGAAGGACG TGGCCGACTC GATCGGGCTG CCGAAGGCGG AGGGCGCGCT CGTCAGCAGC
GTCGAGCCGG GTGGTCCGGC CGACAAGGCG GGCATCCAGC CGGGCGACAT CATCCTGAAG
TTCAATGGTC GGCCGGTCGA GACGGCGTCG GATCTGCCGC GCATGGTCGG CGACACGAAA
CCGGGCACGA AGGCGACCGT CAGCGTATGG CGCAAGGGTC AGGCGCGCGA TCTGCCGATC
ACGATCGCCG AGACGCCGGC GGAGACGACG GCGAAGGCCG AGCAGCGCAA GAGCACGCCG
CAGAAGCCGC GCCAGGCAAA CCCGCTCGGC TTGACGGTCA GCGACATTCC GGCGGAGCAG
ATGAAGTCGC TGAAGCTGAA GAACGGCGTG CAGATCGACG CCGTCGACGG CCCGGCCGCC
CGTGCGGGCC TGCAGCGCGG CGACATCGTG CTGCGCGTCG GCGACACCGA CATCACGAGC
GCGAAGCAGT TCGCGGAAGT GACCGCGCAG CTCGATGCGC AGAAGGCGGT CGCGGTGCTC
GTGCGGCGCG GCGACAACAC GCAGTTCGTG CCGGTGCGCC CGCGCCCGAC CCAGAAGTAA
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| Protein sequence | MTKLTLRNVF AAAVLCACLP LIPHTAVAAT PPAASLPDFA DLVEKVGPAV VNIRTTANVP
IPGPRGALPP GFDNGDMSEF FRRFFGIPLP QAPGNGGGNG NPKNAPAPDN PPDAEQNRGV
GSGFIVSADG YVMTNAHVVD DADTIYVTLT DKREFKAKLI GVDDRTDVAV VKIQASNLPV
VAIGDSNKVR VGEWVVAIGS PFGLDNTVTA GIVSSKSRNT GDYLPFIQTD VAVNPGNSGG
PLINMQGEVI GINSQIYSRT GGFMGISFAI PIDEAMRVAD QLKATGKVTR GRIAVAIGEV
TKDVADSIGL PKAEGALVSS VEPGGPADKA GIQPGDIILK FNGRPVETAS DLPRMVGDTK
PGTKATVSVW RKGQARDLPI TIAETPAETT AKAEQRKSTP QKPRQANPLG LTVSDIPAEQ
MKSLKLKNGV QIDAVDGPAA RAGLQRGDIV LRVGDTDITS AKQFAEVTAQ LDAQKAVAVL
VRRGDNTQFV PVRPRPTQK
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