| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1007 |
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| Symbol | |
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| ID | 6176837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1097165 |
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| End bp | 1097764 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641680759 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001807714 |
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| Protein GI | 172060062 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.35525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGTGAAA AAGAAATCGA TCAGGCTCTG GTCGAGCGCG TACAGAAAGG CGACAAGGCG
GCGTTCGAAC TCCTGGTCTC CAAATACCAC CGCAAGATCA TTCGGCTGAT CTCGCGCCTC
GTGCGGGATC CCGCCGAGGT CGAGGATGTG GCCCAGGATG CGTTCATCAA GGCGTATCGT
GCGCTGCCGC AGTTCCGCGG CGAGTCGGCG TTCTACACGT GGTTGTACCG GATTGCCGTC
AATACGGCGA AGAACTACCT TGCGACGCAG GGCCGCCGGG CACCGACCTC CACGGAGGCC
GATGCCGAGG AAGCGGAAAC TTTCTCCGAC GCAGACCAAC TAAGGGATAT CAACACGCCT
GAGTCGATGT TGATGAGCAA GCAGATTGCC GAGACGGTCA ACGCTGCAAT GGCCGTCCTG
CCCGAAGAGT TGCGCCAGGC GATTACGCTG CGCGAGATCG AGGGCCTGAG CTACGAAGAG
ATCGCGGAAA TGATGGATTG TCCGATCGGG ACGGTCCGGT CGCGAATCTT CCGGGCGCGC
GAGGCAATCG CTGCTAAATT GCGTCCGCTG CTCGATACGC CCGAAGGCAA GCGCTGGTAA
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| Protein sequence | MSEKEIDQAL VERVQKGDKA AFELLVSKYH RKIIRLISRL VRDPAEVEDV AQDAFIKAYR
ALPQFRGESA FYTWLYRIAV NTAKNYLATQ GRRAPTSTEA DAEEAETFSD ADQLRDINTP
ESMLMSKQIA ETVNAAMAVL PEELRQAITL REIEGLSYEE IAEMMDCPIG TVRSRIFRAR
EAIAAKLRPL LDTPEGKRW
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