Gene BamMC406_0992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0992 
Symbol 
ID6179038 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp1085172 
End bp1086122 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content66% 
IMG OID641680744 
ProductRluA family pseudouridine synthase 
Protein accessionYP_001807699 
Protein GI172060047 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAGA TCGACGAAAA CTCGGCCGGT CAGCGGATCG ACAACTTCCT GTTGCGCGTC 
TGTAAAGGTG TGCCCAAAAG CCATATTTAC CGGATCCTGC GCAGCGGCGA AGTGCGCGTG
AATAAGGGTC GGGTCGATGC CCAGTATCGT CTCGCGTTCG GCGACATCGT CCGCGTGCCG
CCCGTGCGGG TGGCGGCGGC CGATCTCGCG CGCGCCGACA CGCCGATCGT GCCGCCCGCG
CAGTTCGAGG TACTGTACGA AGACGATGCG ATGCTCGTCA TCAACAAGCC GGCCGGCGTC
GCGGTGCACG GCGGCAGCGG CGTCGCGTTC GGTGTGATCG AGCAGATGCG CCAGGCGCGC
CCGCGCGCGA AATTCCTCGA ACTCGTGCAC CGGCTCGACC GCGAGACGTC CGGAATCCTG
ATGCTCGCGA AGAAGCGCAC GGCGCTCGTC GGCCTGCACG AGCAGATCCG CGAAAACCGG
ATGGACAAGC GTTACTTCGC GTGCGGACAC GGCGAGTGGC AGTCCGACTG GGGCCGCCGC
CGCGCGGTGA AGGCGCCGCT GTTCAAGTAT TCGACCGCGG AAGGGGAGCG GCGCGTGCGC
GTGCAGGACG ACGGCCTGCC GTCGCACACG GTGTTCAATC TGCTCGAGCG CTGGCCGGAG
TACGCGCTGG TCGAAGCGGA ACTCAAAACG GGCCGGACCC ATCAGATCCG TGTGCACCTC
GCGCATCTCG GCCTGCCGAT CGCCGGCGAC GCCAAGTATG GCGATTTCGC ACTGAACAAG
GCGCTGGCGC GCGCGAACGC GCAGCCGTCG CTGAAACGGA TGTTCCTGCA TGCGCACCGG
CTGAAGCTCG CGCACCCGCT GACCGGCGAG CCGCTGCAGT TCGATGCGCC GCTGCCGGAC
GAATGCCGGC GCTTCCTCGA TCAACTCAGC GCTTTGCGCG ATAACGCATG A
 
Protein sequence
MIEIDENSAG QRIDNFLLRV CKGVPKSHIY RILRSGEVRV NKGRVDAQYR LAFGDIVRVP 
PVRVAAADLA RADTPIVPPA QFEVLYEDDA MLVINKPAGV AVHGGSGVAF GVIEQMRQAR
PRAKFLELVH RLDRETSGIL MLAKKRTALV GLHEQIRENR MDKRYFACGH GEWQSDWGRR
RAVKAPLFKY STAEGERRVR VQDDGLPSHT VFNLLERWPE YALVEAELKT GRTHQIRVHL
AHLGLPIAGD AKYGDFALNK ALARANAQPS LKRMFLHAHR LKLAHPLTGE PLQFDAPLPD
ECRRFLDQLS ALRDNA