Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0992 |
Symbol | |
ID | 6179038 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 1085172 |
End bp | 1086122 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641680744 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001807699 |
Protein GI | 172060047 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGAGA TCGACGAAAA CTCGGCCGGT CAGCGGATCG ACAACTTCCT GTTGCGCGTC TGTAAAGGTG TGCCCAAAAG CCATATTTAC CGGATCCTGC GCAGCGGCGA AGTGCGCGTG AATAAGGGTC GGGTCGATGC CCAGTATCGT CTCGCGTTCG GCGACATCGT CCGCGTGCCG CCCGTGCGGG TGGCGGCGGC CGATCTCGCG CGCGCCGACA CGCCGATCGT GCCGCCCGCG CAGTTCGAGG TACTGTACGA AGACGATGCG ATGCTCGTCA TCAACAAGCC GGCCGGCGTC GCGGTGCACG GCGGCAGCGG CGTCGCGTTC GGTGTGATCG AGCAGATGCG CCAGGCGCGC CCGCGCGCGA AATTCCTCGA ACTCGTGCAC CGGCTCGACC GCGAGACGTC CGGAATCCTG ATGCTCGCGA AGAAGCGCAC GGCGCTCGTC GGCCTGCACG AGCAGATCCG CGAAAACCGG ATGGACAAGC GTTACTTCGC GTGCGGACAC GGCGAGTGGC AGTCCGACTG GGGCCGCCGC CGCGCGGTGA AGGCGCCGCT GTTCAAGTAT TCGACCGCGG AAGGGGAGCG GCGCGTGCGC GTGCAGGACG ACGGCCTGCC GTCGCACACG GTGTTCAATC TGCTCGAGCG CTGGCCGGAG TACGCGCTGG TCGAAGCGGA ACTCAAAACG GGCCGGACCC ATCAGATCCG TGTGCACCTC GCGCATCTCG GCCTGCCGAT CGCCGGCGAC GCCAAGTATG GCGATTTCGC ACTGAACAAG GCGCTGGCGC GCGCGAACGC GCAGCCGTCG CTGAAACGGA TGTTCCTGCA TGCGCACCGG CTGAAGCTCG CGCACCCGCT GACCGGCGAG CCGCTGCAGT TCGATGCGCC GCTGCCGGAC GAATGCCGGC GCTTCCTCGA TCAACTCAGC GCTTTGCGCG ATAACGCATG A
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Protein sequence | MIEIDENSAG QRIDNFLLRV CKGVPKSHIY RILRSGEVRV NKGRVDAQYR LAFGDIVRVP PVRVAAADLA RADTPIVPPA QFEVLYEDDA MLVINKPAGV AVHGGSGVAF GVIEQMRQAR PRAKFLELVH RLDRETSGIL MLAKKRTALV GLHEQIRENR MDKRYFACGH GEWQSDWGRR RAVKAPLFKY STAEGERRVR VQDDGLPSHT VFNLLERWPE YALVEAELKT GRTHQIRVHL AHLGLPIAGD AKYGDFALNK ALARANAQPS LKRMFLHAHR LKLAHPLTGE PLQFDAPLPD ECRRFLDQLS ALRDNA
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