| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0977 |
|---|
| Symbol | |
|---|
| ID | 6176284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1067121 |
|---|
| End bp | 1068023 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641680727 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001807684 |
|---|
| Protein GI | 172060032 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00000786642 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCA CCCGCCTTCC CGACGCCGCA CGCTACTGGC GCACGCCGCT GCTGCCGGAT
GCGGATCTGC TGACGGCCAC CTATCGCAAC CACGCGTTCG CGCCGCACTG GCACGACGCC
TACACGATTC CCGTGATCCT CGAGGGTGCG GAGCGCTACA CGTGTCGCGG CAGCGGCCAT
GTCGCCGAAA CCGGCACCGT GCCGGTGATC AATCCCGGCG AAGTGCACAC GGGCTCGCGC
GCGACCGACG AAGGCTGGTG CTATCGCGTG AGCTACGTGC CGGTCGACTA CATTCGCGCG
CTCGCCAGCA CGATCGCCGG TCGGCCGCAG GATGCGCCGT GGTTCCCGTC CGACGTGATC
CGCGACCCCG ATCTCGCGGC GCGGCTCGCG CTGGCCCACC GGATGATGGA GGCCGGCAGC
GAACGCATAC CGTCCGCTCA CCCGCACGAC CGGCCGGCCG ATGATGCTCC GGCAGCGGGT
GCACCGCGCA TCTACGATCC CCTCGCCGCA GAAACGGCGA TGCTCGATGC GCTGTCGACC
CTGATCGCGC GCCATGCCGA CGCGCGGCTG CAGCCTGCGG CGCTCGCGGC CGACGAGCCG
CGCGTCGAGG TGATGCGCGA ACGGCTCGCC GCCGATCTCA CGTGCCCGGT CACGCTCGGC
GACGTCGCGC AGGCCGCCGG CCTGTCGCCA TTTCACGCGG CGCGCCTGTT CACCCGCACG
ACCGGCATGC CGCCGCATGC GTGGCGCAAC CAGTTGCGGC TACAGCGTGC GCTCGCGCCG
TTGCGCGCGG GCGTATCGAT TGCGGAGGTC GCCGCGGCGA GCGGCTTCGT CGACCAGAGT
CACTTCACGC GACATTTCAA ACGGATGTTC GGCGTACCGC CCGGACGCTG GCAGACGCGC
TGA
|
|---|
| Protein sequence | MSATRLPDAA RYWRTPLLPD ADLLTATYRN HAFAPHWHDA YTIPVILEGA ERYTCRGSGH
VAETGTVPVI NPGEVHTGSR ATDEGWCYRV SYVPVDYIRA LASTIAGRPQ DAPWFPSDVI
RDPDLAARLA LAHRMMEAGS ERIPSAHPHD RPADDAPAAG APRIYDPLAA ETAMLDALST
LIARHADARL QPAALAADEP RVEVMRERLA ADLTCPVTLG DVAQAAGLSP FHAARLFTRT
TGMPPHAWRN QLRLQRALAP LRAGVSIAEV AAASGFVDQS HFTRHFKRMF GVPPGRWQTR
|
|---|
| |