| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0927 |
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| Symbol | rpsA |
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| ID | 6176365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1019708 |
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| End bp | 1021438 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641680677 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001807634 |
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| Protein GI | 172059982 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.722612 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.700665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAATC AGATTTTTAT GTCCGACCTG CAAACCTCCA CCCCGAATAC CGAATCCTTT
GCGGCTCTGT TCGAAGAGTC GCTGACCCGT CAAGACATGC GCGCCGGCGA AGTGATTTCC
GCCGAAGTCG TGCGCGTCGA CCACAACTTC GTGGTCGTCA ATGCAGGCCT GAAGTCCGAG
GCTTACATTC CGATCGAGGA ATTCCTGAAC GATCAGGGCG AGGTTGAGGT GCAGTCGGGC
GATTTCGTGT CCGTCGCGAT CGACGCACTC GAAAACGGCT ATGGCGACAC GATCCTGTCG
CGCGACAAGG CGAAGCGCCT TGCATCGTGG CTGTCGCTGG AAAAGGCCCT CGACAACAAC
GAACTCGTCA CCGGCACGAT CACCGGCAAG GTGAAGGGCG GCATGACCGT GATGGTCAAC
GGCATCCGCG CGTTCCTGCC GGGTTCGCTG GTCGACACGC GTCCGGTCAA GGACACGACC
CCGTACGAAG GCAAGACGCT CGAGTTCCGC GTGATCAAGC TCGATCGCAA GCGTAACAAC
GTCGTGCTCT CGCGTCGTGC AGTGATCGAA GCAACCCAGG GCGAAGAGCG CGCGAAGCTG
CTCGAGACGC TGAAGGAAGG CGCGATCGTC AACGGCGTGG TCAAGAACAT CACCGACTAC
GGCGCGTTCG TCGACCTCGG CGGCATCGAC GGCCTGCTGC ACATCACCGA CATCGCATGG
CGTCGTGTGC GTCACCCGAG CGAAGTCCTG TCGGTTGGCC AGGAAGTCAC CGCGAAGATC
CTCAAGTTCG ACCAAGAGAA GAACCGCGTC TCGCTGGGCA TCAAGCAACT GGGCGACGAT
CCGTGGGAAG GCATCTCGCG CCGTTACCCG TCGGGCACGC GCCTGTTCGG CAAGGTCACG
AACATCACCG ACTACGGCGC ATTCGTCGAA GTGGAATCGG GCATCGAAGG CCTCGTCCAC
GTGTCGGAAA TGGACTGGAC CAACAAGAAC GTTGCTCCGT CGAAGGTTGT CCAGCTGGGC
GACGAAGTCG AAGTCATGGT CCTCGAGATC GACGAAGACC GTCGTCGTAT CAGCCTCGGC
ATGAAGCAGT GCAAGCCGAA TCCGTGGGAT GACTTCAGCC GCAACTTCAA GAAGGGCGAC
AAGATCACGG GCGCAATCAA GTCGATCACC GACTTCGGCG TGTTCATCGG TCTGCCGGGC
GGCATCGACG GCCTGGTCCA CCTGTCGGAC CTGTCGTGGA GCGAAGCCGG CGAAGAAGCC
GTTCGCAAGT ACAAGAAGGG CGACGAAGTC GAAGCAATCG TGCTCGGTAT CGACGTCGAG
AAGGAGCGTA TTTCGCTCGG CATCAAGCAG CTCGAAGGCG ACCCGTTCAG CAACTACGTT
GCAATGAACG ACAAGGGCTC GATCGTCGAC GGCGTGGTGA AGACGGTCGA TGCGAAGGGC
GCTGTCATCA CGCTGACGGG CGACATCGAA GGCTACCTGC GCGCATCGGA AATCTCGCAG
GATCGCGTCG AAGACGCACG CAACGTGCTG AAGGAAGGCG ACAAGGTCAA CGCGATGGTG
ATCAACATCG ATCGCAAGTC GCGTGGCATC AACCTGTCGA TCAAGGCGAA GGATTCGGCT
GAACAACAGG AAGCGATCCG CGGCCTGCAG TCCGACTCGA GCGCTGCCGC GACCGGTACG
ACCAACCTCG GCGCGCTGCT GAAGGCGAAG CTCGACGGCC AGAACCAGTA A
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| Protein sequence | MHNQIFMSDL QTSTPNTESF AALFEESLTR QDMRAGEVIS AEVVRVDHNF VVVNAGLKSE
AYIPIEEFLN DQGEVEVQSG DFVSVAIDAL ENGYGDTILS RDKAKRLASW LSLEKALDNN
ELVTGTITGK VKGGMTVMVN GIRAFLPGSL VDTRPVKDTT PYEGKTLEFR VIKLDRKRNN
VVLSRRAVIE ATQGEERAKL LETLKEGAIV NGVVKNITDY GAFVDLGGID GLLHITDIAW
RRVRHPSEVL SVGQEVTAKI LKFDQEKNRV SLGIKQLGDD PWEGISRRYP SGTRLFGKVT
NITDYGAFVE VESGIEGLVH VSEMDWTNKN VAPSKVVQLG DEVEVMVLEI DEDRRRISLG
MKQCKPNPWD DFSRNFKKGD KITGAIKSIT DFGVFIGLPG GIDGLVHLSD LSWSEAGEEA
VRKYKKGDEV EAIVLGIDVE KERISLGIKQ LEGDPFSNYV AMNDKGSIVD GVVKTVDAKG
AVITLTGDIE GYLRASEISQ DRVEDARNVL KEGDKVNAMV INIDRKSRGI NLSIKAKDSA
EQQEAIRGLQ SDSSAAATGT TNLGALLKAK LDGQNQ
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