| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0923 |
|---|
| Symbol | |
|---|
| ID | 6178689 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1015371 |
|---|
| End bp | 1016453 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641680673 |
|---|
| Product | chorismate mutase |
|---|
| Protein accession | YP_001807630 |
|---|
| Protein GI | 172059978 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0077] Prephenate dehydratase
[COG1605] Chorismate mutase |
|---|
| TIGRFAM ID | [TIGR01807] chorismate mutase domain of proteobacterial P-protein, clade 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.432858 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGACG AACTGAATTC CCGCCTGAAA CCGCTGCGCG ACCGCATCGA CGCGATCGAC
GCGCAGCTGA TCGCGCTCCT CAATCAGCGC GCCGCGGTGG CGCTCGAGGT AGGCGAGGTC
AAGAAGCATT TCAACGCGCC GGTGTTTCGG CCGGAGCGCG AGCTGCAGGT GATCGCGCGC
CTGCAGGACA TGAGCGCGGG GCCGCTCGCG GGCGAGCACA TCAGCGCCAT CTGGCGCGAG
ATCATGGCCG CGAGCCGCGC GCTCGAGCAG ACGATCCACG TCGCATTCCT CGGGCCGGTC
GGCACGTACA GCGAACAGGC GATGTTCGAG TATTTCGGCC AGTCGATCGA AGGGCTGCCG
TGTCCGTCGA TCGACGAGGT GTTCCGCTCG GTCGAGGCGG GTGCGGCCGC ATTCGGCATC
GCGCCCGTCG AGAATTCGAC CGAAGGCGCG GTGTCGCGCA CGCTCGACCT GCTGCTGCAG
ACTCAGTTGC TGATCAGCGG CGAGCTCGCG CTGCCGATCC ATCACAACCT GCTCACGCAG
AGCGGCACGC TCGACGGCGT GACGCGCGTC TGCGCGCATG CGCAGGCACT CGCGCAATGC
CAGCAGTGGC TTGCCGCGAA CGCGCCGCAG CTCGAGCGGC AAGCGGTGTC GAGCAACGCG
GAGGCCGCGC GTCTCGCGGC GGCCGACCCG AGCGTCGCGG CCATCGCGGG CGATCGCGCG
GCCGCGCACT ACGGGCTGCA GATCGCGTTC TCGCTGATCC AGGACGATCC GCACAATCGC
ACGCGCTTCG TGATCATCGG CAAGGAGCCG GCCGGGCAGA GCGGTCACGA CCAGACGTCG
CTGATCGTGT CGGTGAAGAA CGAGCCGGGC GCGGTGTTCA AGCTGCTCGA ACCGCTCGCG
CGGCACGGCG TGTCGATGAC GCGCTTCGAG TCGCGTCCGG CGCGCGTCGG CACGTGGGAG
TATTACTTCT ACATCGACAT CGAAGGGCAC CGGGATGAAG CGGCGGTGGC TGCCGCGCTC
GCGGAGCTCG GCCAGAAGGC CGCGTTCCTG AAGATACTCG GTTCGTATCC GCGCGCGCGC
TGA
|
|---|
| Protein sequence | MDDELNSRLK PLRDRIDAID AQLIALLNQR AAVALEVGEV KKHFNAPVFR PERELQVIAR
LQDMSAGPLA GEHISAIWRE IMAASRALEQ TIHVAFLGPV GTYSEQAMFE YFGQSIEGLP
CPSIDEVFRS VEAGAAAFGI APVENSTEGA VSRTLDLLLQ TQLLISGELA LPIHHNLLTQ
SGTLDGVTRV CAHAQALAQC QQWLAANAPQ LERQAVSSNA EAARLAAADP SVAAIAGDRA
AAHYGLQIAF SLIQDDPHNR TRFVIIGKEP AGQSGHDQTS LIVSVKNEPG AVFKLLEPLA
RHGVSMTRFE SRPARVGTWE YYFYIDIEGH RDEAAVAAAL AELGQKAAFL KILGSYPRAR
|
|---|
| |