| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0904 |
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| Symbol | |
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| ID | 6178700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 993758 |
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| End bp | 995596 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641680654 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001807611 |
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| Protein GI | 172059959 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0457] FOG: TPR repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.587904 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.769196 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTCCG CATTCGACCG AGCGTATGCC GCGCACCGCG CGGGGCGCCT CGCCGAGGCC
GAGCACGGCT ACCGTGCCGC GCTCGGCACC AATCCCGCCG ACGCCGACGC GCTGCATCTG
TTCGGCGTGC TGCGGCATCA GCAGGGCCAG CATGCCGAGG CAGCCGATCT CGTCGGGCGT
GCGGTCGAAT TGCGCCCGGG CGACGCCGCG CTCCAGCTCA ATCTCGGCAA CGCGCTGAAG
GCGCTCGGCC GGCTCGACGA AGCGATCGAG CGGTTTCGCA ACGCGCTGAC GCTCGCGCCC
GAATTCCCGC TCGCGCACTA CAATCTCGGC AACGCTTACG CGGCGCTGCA GCGCCACGAA
GATGCCGTCG ACGCGTTCGG CCGCGCACTT CGCCTCACGC CCGACGACGC ATCGATCCAC
AACAATCTCG GCAACGCGCT GAACGCGCTC GGCCGTCACG ACGATGCGCT CGCCGCGTTC
CATCGCGCGC TCGAGCTGCG GCCCGGACAT GCCGGCGCGC ACAACAATCT CGCGATGGCG
CTGAACGCGA TGGGCCGCGC CGACGACGCG ATCGAGCACT TCCAGGCGGC GATCGCCGCG
CAGCCGCGCT TCGTCGCCGC GCACTTCAAT CTCGGCAACA CGTTCGAGGC GCTCGGCCGT
CACGACGAAG CCGCGGCGGC GTTCGAAGCC GCACTCGCGC TGCACCCGCC GTTCCCGCTC
GCCCTGTTCG GGCTCGCGAA CGCGCTGAGC GCGCTCGGGC GCCAGCGCGA AGCGCTGCCT
TACTACGAAC GCGCGGTCGG CCTCGATCCG TCGTTCAGTC TCGCGTGGCT GAACCTCGGC
AATGCGCATC ACGCACTCGG CGCGCACGAA ATGGCGCTGC GCGCGTTCGA CCAGGCGCTG
CGCGTCGCGC CCGACCTGAA GCTCGCGCAA CTGCACCGCG CGGTCACGCT GCTGACGCTG
GGCGACTTCA CGCGCGGCCT GCCCGCGTAC GAAACGCGCC ACGACACGCC GGGCGCGACG
CCGCTCGGCA CGCTGCCGCG CTGGCAAGGC GAGCCGATTG CGTCGCGCAC GCTGCTGATC
CGCGCGGAAC AAGGCTTCGG CGACACGCTG CAGTTCGTCC GCTTCGTGCC GCTGGCCCGC
GCGCGCTGCG CGCGCGTCGT GCTCGAAGTA CAGCCGGAGC TCGTCGCACT GCTCGCGCCG
GCGGCCACGC GCTGGCGCGT GACGCTCGTC GCACAGGGCG CGGCGAAGCC GCCGGCGGCG
GACGTCGCGT GCACGCTGAT GAGCCTGCCT TTCCTGCTCG GTCTGCAGCC GTCCGACATC
GTCGCGCGCA AGCGTTACCT CGACGCGCCG GACAGCGCGC GCCGGCGCTT TCGCGGCTCG
CTCGGCGGCC AGTCGAAGCG CAAGTTCGGC CTCGCGTGGT CGGGGCGCCG CCAGGCGCAG
GAAAACCGCT CGATGCCGTT CGACGCGCTC GCACCGCTGC TCGCGCTGCC GGACATCGAT
TGGGTCGTGC TGCAGCCCGC GCTCGACGAA GACGAACGGG CGCGCGTCGA CGCGCATCCG
CGCGTGCATC ACCTCGACGG GCGGCTGAAC GACTTCGCCG ACACGGCCGC GCTGATCGAA
CGGCTCGACG GCGTCGTCAC GATCGATACG GCCGTCGCGC ATCTGGCGGG CGCGCTCGGC
AAGCCGCTGT GGATCATGCT GCCGTTCGCG CCCGACTGGC GCTGGTTCAC CGGCCACGAC
TGTCCGTGGT ATCCGCACGC GAGGCTGGCC CGCCAGTCCG CACCGGGACA ATGGCTCGAC
GTGGCGGCGA CGGTCGCCGA CGCGCTGCGC GCCGCGTGA
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| Protein sequence | MDSAFDRAYA AHRAGRLAEA EHGYRAALGT NPADADALHL FGVLRHQQGQ HAEAADLVGR
AVELRPGDAA LQLNLGNALK ALGRLDEAIE RFRNALTLAP EFPLAHYNLG NAYAALQRHE
DAVDAFGRAL RLTPDDASIH NNLGNALNAL GRHDDALAAF HRALELRPGH AGAHNNLAMA
LNAMGRADDA IEHFQAAIAA QPRFVAAHFN LGNTFEALGR HDEAAAAFEA ALALHPPFPL
ALFGLANALS ALGRQREALP YYERAVGLDP SFSLAWLNLG NAHHALGAHE MALRAFDQAL
RVAPDLKLAQ LHRAVTLLTL GDFTRGLPAY ETRHDTPGAT PLGTLPRWQG EPIASRTLLI
RAEQGFGDTL QFVRFVPLAR ARCARVVLEV QPELVALLAP AATRWRVTLV AQGAAKPPAA
DVACTLMSLP FLLGLQPSDI VARKRYLDAP DSARRRFRGS LGGQSKRKFG LAWSGRRQAQ
ENRSMPFDAL APLLALPDID WVVLQPALDE DERARVDAHP RVHHLDGRLN DFADTAALIE
RLDGVVTIDT AVAHLAGALG KPLWIMLPFA PDWRWFTGHD CPWYPHARLA RQSAPGQWLD
VAATVADALR AA
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