| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0860 |
|---|
| Symbol | |
|---|
| ID | 6177319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 948108 |
|---|
| End bp | 949805 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641680605 |
|---|
| Product | chloride channel core |
|---|
| Protein accession | YP_001807567 |
|---|
| Protein GI | 172059915 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0038] Chloride channel protein EriC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.442414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAACGA CGCTTGGCGG GTACAAACAT TACACCGACA TTACATTTGC AACAAAATGC
ATCGTTTTTG TGAAGGTTTG TCGAGACCGG CATCCGGTTC TTTTTATAAT GCATTTTTGC
CCCTCCGGCA CGCCGCCGAT GCAACGCTCC ACCCTTCCCA CTCTGTTTCC CGCCCTCACC
CGCCGCTCGG TGCGGATCTG GCGCCAGTAC GGTGTATTTT GGCTCGGCGC GATCGCCGTG
GGCCTGGCAG CCGTGCTGTA CGCGCGGCTG ATCGACTGGG GCTACGACAC GTTCCGCACG
CTGCGCGAGC ACGCCGCATG GCTGCCGCTG CTGCTCACGC CGTCGATCGC CGCGGCATCC
GTGTGGATGA CGCGCCGCTT CTTTCGCGGC GCGGAGGGCA GCGGGATCCC GCAGGTCATC
GCGACGCTGC ATGCGAGCCC GGGCGCGTTC GGCGCGCGGC TGCTCACGCT GCGCATCCTG
TTCGGCAAGG TCCTGATCTC GTTCCTGGGG ATCCTCGGCG GCTTCACGAT CGGCCGCGAA
GGCCCGACCG TGCAGGTCGG CGCGGCGCTG ATGTTCAACC TGCGGCGCTT CTACCCGCGC
TCGAACGCGC AAATCGAGCG GCAACTCGTG CTCGCCGGTG CGGCGGCCGG CCTGTCGGCC
GCGTTCAATA CGCCGCTCGC CGGGATCGTA TTCGCGATCG AGGAACTGAC GCGCAGCTTC
TCCGCGCGCG CAAGCGGCGT GCTGATCACC GCGATCATCC TCGCCGGTGT CGTCGCATTG
GGCCTGAACG GCAATTACAC GTACTTCGGC ACGATCGACG CCGGCCAGCA TTTCCCGAAA
ATGCTCGCCG TCGCCGTGCT CGTCACCGCG CTCGTGACCG GCGTCGCGGG CGGCCTCTTC
AGCTGGCTGC TGCTCAATAC CGGGCGCTGG CTGCCCGCGC GCCTGCTCGG CCTGTATCGC
GAGCGCCCGA TCACGTTCGC GGCGGTGTGC GGCTTCGTGA TCGCCGTCGT CGGCATCGTG
TCGGGCGGGA CGACGTTCGG CAGCGGCTAT GCCGAGGCAC GCGGCCTGCT CGACGGCCAT
GAACAACTGT CGGTGTTCTA TCCGTTCCTG AAAATGGTGT CGATGGTCGC GTCGTACCTG
CCGGGCATCC CGGGCGGGAT CTTCGCGCCG TCGCTGTCGA TCGGCGCCGG GTTCGGCAAC
CTGCTGCACA TCGCGTTCAG CCACATGAGC CTGCCGATGC TGATCGCGCT GGCGATGGTC
GGCTACCTCG CGGCCGTCAC GCAGTCGCCG ATCACGTCGT TCGTGATCGT GATGGAGATG
ATCAACGGCC ATGCGCTCGT GATTTCGCTG ATGGCGACCG CGCTGGTGTC GAGCCGCATG
GCGCGCTTCT TCGCGCCGCC GCTCTACGAA ACGCTCGCGC AGCGCTATCT CGCGCCGCCC
GCGGCCGCCG TCGAACCGGC CCGCGCAGCA GCGCCGGCGG CAGCAACCGG CGTCACCGAG
CCGCAGGACG CGGCCGCAGC GCCCGCCGAT CCGCTCGACA CGCTGCGCGA AGGGGATGGC
CGCGAGCCGG ACACCGCGGC GGCTGACACC GACACGGACA CCGGCGCCAC ACACACGCCG
GCGACGCCGC ATGACGGCAG CCGGCCGGCA TCCGGCGCGA ACGGCCCGGC ACAACCGGGC
TCGACCGACA CTCAGTAG
|
|---|
| Protein sequence | MLTTLGGYKH YTDITFATKC IVFVKVCRDR HPVLFIMHFC PSGTPPMQRS TLPTLFPALT
RRSVRIWRQY GVFWLGAIAV GLAAVLYARL IDWGYDTFRT LREHAAWLPL LLTPSIAAAS
VWMTRRFFRG AEGSGIPQVI ATLHASPGAF GARLLTLRIL FGKVLISFLG ILGGFTIGRE
GPTVQVGAAL MFNLRRFYPR SNAQIERQLV LAGAAAGLSA AFNTPLAGIV FAIEELTRSF
SARASGVLIT AIILAGVVAL GLNGNYTYFG TIDAGQHFPK MLAVAVLVTA LVTGVAGGLF
SWLLLNTGRW LPARLLGLYR ERPITFAAVC GFVIAVVGIV SGGTTFGSGY AEARGLLDGH
EQLSVFYPFL KMVSMVASYL PGIPGGIFAP SLSIGAGFGN LLHIAFSHMS LPMLIALAMV
GYLAAVTQSP ITSFVIVMEM INGHALVISL MATALVSSRM ARFFAPPLYE TLAQRYLAPP
AAAVEPARAA APAAATGVTE PQDAAAAPAD PLDTLREGDG REPDTAAADT DTDTGATHTP
ATPHDGSRPA SGANGPAQPG STDTQ
|
|---|
| |