Gene BamMC406_0840 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0840 
Symbol 
ID6178900 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp928847 
End bp930094 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content66% 
IMG OID641680584 
Productextracellular solute-binding protein 
Protein accessionYP_001807547 
Protein GI172059895 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.961003 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTTC GCTCGATCAT GGGCGCGCTC TGCGCCGCGG GTCTGATGGC TGGCGCCGTG 
GCGGCGCAGG CGGCCGAGAA CGTAACGGTG CTGCACTGGT GGACCTCGGG CGGCGAGTCG
AAGGCCGTCG GCGTGCTGAA GGACGACCTC CAGAAGCAGG GCTACGTGTG GAAGGACTTC
GCGGTCGCGG GCGGCGCGGG CGCGGCGGCC ATGACCGCGC TGAAGACCAA GGTGATCAGC
GGCGACTCCC CGTCGGCCGC GCAGATCAAG GGCCCGCTGA TCCAGGACTG GGCCGACCAG
GGCGTGCTCG TCAACATCGA TTCCGCTGCC GGCGACTGGA AGCAGAACCT GCCGCCGGAA
ATCGACAAGA TCATCAAGTA CAAGGGCCAT ACCGTCGCCG CGCCGTTCTC GGTGCACCGC
GTGAACTGGC TCTATATCAA CAAGGCGGCG CTCGACAAGG TCGGCGCGAA GGTGCCGACC
ACCTGGCCTG AGTTCTTCGC GGTGGCCGAC AAGCTGAAGG CCGCGGGCAT TCAGCCGGTC
GCGATGGGCG GCCAGCCGTG GCAGGACCTG ACACTGTGGG AAGACGTCGT GCTGTCGCAG
GGTCCGGCGT TCTACAAGAA GGCGCTCGTC GATCTCGACC AGGCCACGCT GAATTCGCCG
CAGATGGTGT CGGTGTTCGA CACGGTGCGC AAGATCCAGG GCTACTTCGA CACCGGCCGC
AACGGCCGTG ACTGGAACCT CGCGACCGCG ATGGTGATCA ACGGCAAGGC CGGCATGCAG
TTCATGGGCG ACTGGGCGAA GGGCGAGTTC GAGAACGCGG GCAAGAAGGC CGGCAAGGAC
TATATCTGCG CACCGGTGCC CGGCACGGCG AATTCGTACA CGTTCAACGT CGACTCGTTC
GTGTTCTTCC AGCAGAAGGG CCAGAAGGAC GCGACGCCGG GCCAGATCGC GCTCGCGAAG
ACGATCATGA CGCCGGCCTT CCAGGAGCAG TTCAGCTTGC TGAAGGGCTC GGTGCCGGTA
CGCCTCGGCG TGAAGATGGA CAAGTTCGAC GACTGCGCGA AGAAGTCGTA TGCCGACGAG
CAGACCGCGA TCAAGTCGGG CGGCTTCGTG CCGTCGCTCG CGCACGGGAT GGCGCAGGGC
GACGCGACGG CCGGCGCGAT CACCGACGTC GTCACGAAGT TCATGAACTC GCAGCAGGAT
TCGAAGAGCG CGGTCGCCGC GCTCGCGAAA GCCGCGAAGG TGAAGTAA
 
Protein sequence
MKVRSIMGAL CAAGLMAGAV AAQAAENVTV LHWWTSGGES KAVGVLKDDL QKQGYVWKDF 
AVAGGAGAAA MTALKTKVIS GDSPSAAQIK GPLIQDWADQ GVLVNIDSAA GDWKQNLPPE
IDKIIKYKGH TVAAPFSVHR VNWLYINKAA LDKVGAKVPT TWPEFFAVAD KLKAAGIQPV
AMGGQPWQDL TLWEDVVLSQ GPAFYKKALV DLDQATLNSP QMVSVFDTVR KIQGYFDTGR
NGRDWNLATA MVINGKAGMQ FMGDWAKGEF ENAGKKAGKD YICAPVPGTA NSYTFNVDSF
VFFQQKGQKD ATPGQIALAK TIMTPAFQEQ FSLLKGSVPV RLGVKMDKFD DCAKKSYADE
QTAIKSGGFV PSLAHGMAQG DATAGAITDV VTKFMNSQQD SKSAVAALAK AAKVK