| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0830 |
|---|
| Symbol | |
|---|
| ID | 6178572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 918083 |
|---|
| End bp | 919204 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641680576 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_001807539 |
|---|
| Protein GI | 172059887 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTCGG ATACCGATTT CGCCCACATG CAGCGCGCGC TGACGCTCGC GGCGCGCGGC
ATGTACACGA CCGCGCCGAA CCCGCGCGTC GGCTGCGTGA TCGTCAAGGA CGGCAACGTC
ATCGGCGAAG GCTTCACGCA GCCGGCCGGC CAGGACCACG CGGAGGTGCA GGCGCTGAAG
GACGCGCGTG CGCGCGGCCA TGACGTCGCC GGCTCCACCG TGTACGTGAC GCTCGAGCCG
TGCAGCCACT TCGGCCGCAC GCCGCCGTGC GCGAACGCGC TGATCGACGC GCGCGTCGCG
AAGGTCGTCG CGGCGATGGA AGACCCGAAC CCGCAGGTAT CGGGGCGCGG CCTCGGGATG
CTGCGCGACT CCGGCATCGA CGTGCGCTGC GGGCTGCTCG CGAACGAAGC GGGCGAACTG
AACATCGGCT TCGTGTCGCG GATGACGCGC GGCCGCCCGT GGGTGCGGAT GAAGACGGCC
GCGTCGCTCG ACGCACGCAC CGCGCTGCCG TCCGGCGAAA GCCAGTGGAT CACCGGCGAG
GCCGCGCGCC TCGACGGCCA CGCATGGCGC GCACGCGCAT GCGCGATCCT CACCGGGATC
GGCACGGTGC GCGAGGACAA CCCGCTCCTG ACGGTGCGCG GCATCGACAC GCCGCGCCAG
CCGCAGCGCG TGCTGGTCGA CAGCCGCCTC GACCTGCCGC TCGATGCGCG CCTGCTCGAG
GGCGCGCCGC TGCTGATCTT CTGCGGCCGG CTCGATGCGG CCGGCGAAGT GCGCGCGAAG
GTGCTGAAGT CGCGTGGCGC GGAAATCGTG CCGCTCGCGA ATGCGCACGG CAAGGTCGAC
CTGCCCGCGA TGCTGGCGGC GCTCGGCGCG CGCGGCGTCA ACGAGCTGCA CGTCGAGGCC
GGCCACAAGC TGAACGGTTC GCTGCTGCGC GAACAGTGCG TCGACGAGCT GCTCGTCTAT
CTCGCGCCGA GCCTGCTCGG CAGCGACGCG GCCGGCATGT TCGACCTCGC CGCACCGGCG
AGCCTCGACG CGCGCACGCG GCTCGCATTC CACAGCGTCG AGCGGATCGG CGACGATCTG
CGGATTCTCG CGCGCGTCGC GCCGCCTGCC GCCACCCACT GA
|
|---|
| Protein sequence | MFSDTDFAHM QRALTLAARG MYTTAPNPRV GCVIVKDGNV IGEGFTQPAG QDHAEVQALK
DARARGHDVA GSTVYVTLEP CSHFGRTPPC ANALIDARVA KVVAAMEDPN PQVSGRGLGM
LRDSGIDVRC GLLANEAGEL NIGFVSRMTR GRPWVRMKTA ASLDARTALP SGESQWITGE
AARLDGHAWR ARACAILTGI GTVREDNPLL TVRGIDTPRQ PQRVLVDSRL DLPLDARLLE
GAPLLIFCGR LDAAGEVRAK VLKSRGAEIV PLANAHGKVD LPAMLAALGA RGVNELHVEA
GHKLNGSLLR EQCVDELLVY LAPSLLGSDA AGMFDLAAPA SLDARTRLAF HSVERIGDDL
RILARVAPPA ATH
|
|---|
| |