| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0822 |
|---|
| Symbol | |
|---|
| ID | 6178427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 909758 |
|---|
| End bp | 911314 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641680568 |
|---|
| Product | UbiD family decarboxylase |
|---|
| Protein accession | YP_001807531 |
|---|
| Protein GI | 172059879 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.246371 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACA AAGACTTACG CGATTTCATC CAGCGCCTCG AGGCGCTCGG CGAACTGCGG
CGCGTCACGC AACCCGTGTC GCCCGTGCTC GAAATGACCG AGCTGTGCGA CCGCGTGCTG
CGCGCCGGCG GCCCGGCGCT GCTGTTCAAC GCCCCGCCCG GCAATGCGTT CCCGGTGCTC
GGCAACCTGT TCGGCACGCC GCGCCGCGTC GCGCTCGGGA TGGGCGTCGA TGCGGGCGAC
GACGCCGCGC TCGGCTCGCT GCGCGACCTC GGGCGGCTGC TGTCCGCGCT GAAGGAGCCG
GATCCGCCGA AGAGCCTGAA GGACGCCGGC AAGCTGCTGT CGCTCGCGAA GGCCGTGTGG
GACATGGCGC CGAAATCGGT GTCGTCGCCG CCGTGCCAGG AGATCGTCTG GGAAGGCGCC
GACGTCGATC TGCACAAGCT GCCCATCCAG ACCTGCTGGC CCGGCGACGC GGGGCCGCTC
GTCACGTGGG GCCTCACCGT CACGCGCGGG CCGAACAAGC CGCGCCAGAA CCTCGGCATC
TACCGTCAGC AGCTGATCGG CCGCAACAAG CTGATCATGC GCTGGCTCGC GCATCGCGGC
GGCGCGCTGG ACTTCCGCGA ATTCGCGCTG CAGAACCCGG GCAAGCCGTA TCCGGTCGCG
GTCGTGCTGG GCGCGGACCC GGCCACGACG CTCGGCGCGG TAACACCCGT GCCCGATTCG
CTGTCCGAGT ACCAGTTCGC CGGCCTGCTC CGCGGCAGCC GCACCGAACT CGCGAAGTGC
CTGACGCCCG GCGTCGACAC GCTGCAGGTG CCCGCCCGCG CGGAGATCGT CCTCGAAGGC
TTCATTCACC CGCAGGAAGG CACGCCCGCC CCTGCTCCGG CCGGCGCGCC GCCGCGTCCG
GCCGGCAACG CGTCCGCCGC GTACGAGCAC GCGCTCGAAG GCCCGTACGG CGACCACACC
GGCTACTACA ACGAGCAGGA GTGGTTTCCG GTGTTCACCG TCGAGCGCAT CACGATGCGC
CGCGACGCGA TCTATCACTC GACCTACACC GGCAAGCCGC CCGACGAGCC GGCCGTGCTC
GGCGTCGCGC TCAACGAGGT ATTCGTGCCG CTGCTGCAGA AGCAGTTCAC CGAGATCACC
GACTTCTACC TGCCGCCGGA AGGCTGCAGC TACCGGATGG CCATCGTCCA GATGAAGAAG
AGCTACGCGG GCCATGCGAA GCGCGTGATG TTCGGCGTGT GGAGCTTCCT GCGGCAGTTC
ATGTATACGA AGTTCATCGT GGTCGTCGAC GAGGACGTGA ACATCCGCGA CTGGAACGAG
GTGATCTGGG CGATCACGAC GCGCGTCGAC CCCGTGCGCG ACACCGTGAT GGTCGACAGC
ACGCCGATCG ACTATCTCGA TTTCGCGTCG CCCGTCGCGG GCCTCGGCTC GAAGATGGGG
CTCGACGCGA CCAACAAGTG GCCCGGCGAG ACGAACCGCG AATGGGGCCG CCCGATCGAG
ATGGACGCGG CGGTGAAGGC GCGCGTCGAT CGCCTCTGGC AAGAGATCGG ACTCTAA
|
|---|
| Protein sequence | MKYKDLRDFI QRLEALGELR RVTQPVSPVL EMTELCDRVL RAGGPALLFN APPGNAFPVL
GNLFGTPRRV ALGMGVDAGD DAALGSLRDL GRLLSALKEP DPPKSLKDAG KLLSLAKAVW
DMAPKSVSSP PCQEIVWEGA DVDLHKLPIQ TCWPGDAGPL VTWGLTVTRG PNKPRQNLGI
YRQQLIGRNK LIMRWLAHRG GALDFREFAL QNPGKPYPVA VVLGADPATT LGAVTPVPDS
LSEYQFAGLL RGSRTELAKC LTPGVDTLQV PARAEIVLEG FIHPQEGTPA PAPAGAPPRP
AGNASAAYEH ALEGPYGDHT GYYNEQEWFP VFTVERITMR RDAIYHSTYT GKPPDEPAVL
GVALNEVFVP LLQKQFTEIT DFYLPPEGCS YRMAIVQMKK SYAGHAKRVM FGVWSFLRQF
MYTKFIVVVD EDVNIRDWNE VIWAITTRVD PVRDTVMVDS TPIDYLDFAS PVAGLGSKMG
LDATNKWPGE TNREWGRPIE MDAAVKARVD RLWQEIGL
|
|---|
| |