| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0750 |
|---|
| Symbol | groEL |
|---|
| ID | 6178388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 836170 |
|---|
| End bp | 837810 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641680498 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_001807462 |
|---|
| Protein GI | 172059810 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.20211 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.100291 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCTA AAGACGTCGT ATTCGGCGAT TCCGCCCGTT CGAAGATGGT CGAAGGCGTG
AACATTCTCG CCAACGCGGT CAAGGTCACG CTGGGTCCGA AGGGCCGCAA CGTGGTGCTC
GAGCGCAGCT TCGGCGGCCC GACGGTCACC AAGGACGGTG TGTCGGTCGC GAAGGAAATC
GAGCTGAAGG ACAAGCTCCA GAACATGGGC GCGCAAATGG TCAAGGAAGT CGCTTCCAAG
ACCAGCGACA ACGCAGGCGA CGGCACGACG ACGGCAACCG TCCTCGCGCA ATCGATCGTT
CGCGAAGGCA TGAAGTACGT CGCATCGGGC ATGAACCCGA TGGACCTGAA GCGCGGCATC
GACAAGGCAG TCGCAGCGGC CGTCGAAGAG CTGAAGAAGA TCAGCAAGCC GTGCACGACG
AACAAGGAAA TCGCGCAGGT CGGCTCGATC TCGGCGAACA GCGACACGTC GATCGGCGAT
CGCATCGCTG AAGCGATGGA CAAGGTCGGC AAGGAAGGCG TGATCACCGT CGAAGACGGC
AAGTCGCTCG CCGACGAACT CGACGTCGTC GAAGGCATGC AGTTCGACCG CGGCTACCTG
TCGCCGTACT TCATCAACAA CCCGGAAAAG CAAGTCGCCG TCCTCGACAA CCCGTTCGTG
CTGCTGCACG ACAAGAAGGT GTCGAACATC CGTGATCTGC TGCCGGTACT CGAGCAAGTC
GCGAAGGCTG GCCGTCCGCT GCTGATCATC GCTGAAGACA TCGAAGGCGA AGCGCTCGCA
ACGCTGGTCG TCAACAACAT CCGCGGCATC CTGAAGACCG TCGCGGTCAA GGCACCGGGC
TTCGGCGATC GTCGCAAGGC GATGCTGGAA GACATCGCGA TCCTGACCGG CGGCCAGGTG
ATCGCGGAAG AAACCGGCCT GACGCTCGAG AAGGCAACGC TGGCAGAACT GGGCCAGGCG
AAGCGCATCG AAGTGGGCAA GGAAAACACG ACGATCATCG ACGGCGCAGG CGAAGCCGCG
AACATCGAAG CACGCGTGAA GCAAGTGCGC GCGCAAATCG AAGAAGCGAC GTCGGACTAC
GACCGTGAAA AGCTGCAAGA GCGCGTGGCC AAGCTGGCCG GCGGCGTGGC AGTGATCAAG
GTCGGCGCTG CGACCGAAGT CGAAATGAAG GAAAAGAAGG CACGTGTCGA AGACGCACTG
CACGCAACGC GTGCAGCTGT GGAAGAAGGC ATCGTGGCAG GCGGCGGCGT TGCGCTGATC
CGCGCTCGCA CGGCAATCGC AAGCCTGACC GGCGCGAACG CCGACCAGAA CGCCGGCATC
AAGATCGTGC TGCGCGCGAT GGAAGAGCCG CTGCGTCAGA TCGTCACGAA CGGCGGCGAA
GAAGCCAGCG TCGTGGTGGC GGCAGTTGCT GCAGGCCAGG GCAACTACGG CTACAACGCA
GCAACGGGCG AGTACGTCGA CATGGTTGAA GCCGGCGTCG TCGACCCGAC CAAGGTCACG
CGCACCGCAC TGCAGAACGC AGCTTCGGTT GCTGGCCTGC TGCTGACGAC GGACGCAGCT
GTCGCAGAAC TGCCGAAGGA AGATGCACCG ATGCCGGGCG GCATGCCGGG CGGCATGGGC
GGCATGGGCA TGGACATGTA A
|
|---|
| Protein sequence | MAAKDVVFGD SARSKMVEGV NILANAVKVT LGPKGRNVVL ERSFGGPTVT KDGVSVAKEI
ELKDKLQNMG AQMVKEVASK TSDNAGDGTT TATVLAQSIV REGMKYVASG MNPMDLKRGI
DKAVAAAVEE LKKISKPCTT NKEIAQVGSI SANSDTSIGD RIAEAMDKVG KEGVITVEDG
KSLADELDVV EGMQFDRGYL SPYFINNPEK QVAVLDNPFV LLHDKKVSNI RDLLPVLEQV
AKAGRPLLII AEDIEGEALA TLVVNNIRGI LKTVAVKAPG FGDRRKAMLE DIAILTGGQV
IAEETGLTLE KATLAELGQA KRIEVGKENT TIIDGAGEAA NIEARVKQVR AQIEEATSDY
DREKLQERVA KLAGGVAVIK VGAATEVEMK EKKARVEDAL HATRAAVEEG IVAGGGVALI
RARTAIASLT GANADQNAGI KIVLRAMEEP LRQIVTNGGE EASVVVAAVA AGQGNYGYNA
ATGEYVDMVE AGVVDPTKVT RTALQNAASV AGLLLTTDAA VAELPKEDAP MPGGMPGGMG
GMGMDM
|
|---|
| |