| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0734 |
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| Symbol | |
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| ID | 6178240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 820483 |
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| End bp | 821973 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641680482 |
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| Product | TRAP-type uncharacterized transport system periplasmic component-like protein |
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| Protein accession | YP_001807446 |
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| Protein GI | 172059794 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.146583 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCAG CCAGACCTCG CCCGCCCCGC CGCATCCTCG CCCGCTTCGT CGCGGTGTCG
TGGCGCGACC TCGCGCTGTC GATCGGCCCC ACCGTGCTGC TCGCGGGCAC GGCGGTCTGG
CTCGCGGTCA AGCTGATCCA GCCGGCGCCG CCGTCCACGC TCGTGATTTC GTCCGGGCCG
CCCGGCAGCA CCTACTGGAA CGCCGCGCAG AAATACAAGG CGATCCTCGC GAAGAACGGC
GTCACGCTCG ACGTCGAGTC GTCCGAAGGA TCGGCGCAGA ACCTCGAGCG GCTGTCGAAC
CCGAACGCGC CGGTCGACGT CGGCTTCGTG CAGAGCGGCA TCGGGCCGAA GGAGCGCGAC
GAGCACCTGG TCTCGCTCGG CAGCATTGGC TACGTGCCGC TCGCGATCAT GTACCGCGGC
CCGATCGTCG CCCGCCTGTC GGACTTCAAG GGCAAGCGCC TCGCGCTCGG CGCAGAGGGC
AGCGGCGCGC GCGAACTGAG CCTGGCGCTG CTGAAGATGA ACGGCATCGT GCCGGGCGGC
GCGACCGAGC TGCTGCCGAC CGCCGGCGAG GACGCCGCGA CCGCGCTGCT CGACGGCAAG
ATCGACGCCG CGTTCCTGTC CGGCGACTCG ACCCAGATCC CGGTGATGGC GAAGCTGTTC
CGCGCGCCGG GCGTGCACGT GTACTCGTTC ACGCAGGCCG AGGCGTACGC GCGGCGCTTT
CCGTACCTGA CCGCGATCAC GCTGCCGATG GGCGTCTACG ATCTCGGCCG CAACCTGCCG
CCCGCCGACA TCCACACGGT CGCGCCGACG ATCGAGCTGG TCGCGCGCGA CACGCTGCAC
CCCGCGCTGT CCGACCTGCT GATCGAGGCC GCGCGCGAGG TGCACGGCCA CGCGACGATC
CTGCAGCACG CGGGCGAATT CCCGTCGGCC GTCACGCGCG GCTTCCCGCT GTCGGACGAC
GCGGCGCGCT ACTACAAGTC GGGCAAGACC TTCCTGTACC GGCGGCTGCC GTTCTGGGTC
GCGAGTCTGG TCGACCGGAT GCTCGTCGTG CTGGTGCCGC TGATCGTCGT GCTGATTCCC
GGGCTGCGGC TGGTGCCGTC GCTGTACGGC TGGCGCGTGC GTTCGCGCAT CTACCGCTGG
TACGGCGCGC TGATCGCGCT CGAGCGCCGC GCGCTCGGCG AGCATACGGC CGAGGAGCGT
GTCCAGCTGC TCGACGAGCT CGACGACATC GAGGAAGCCG TGAACCGGAT GAAGATGCCG
CTCGCGTACG CGGGCCAGTT CTACGTGCTG CGCGAGCACA TCGGCTTCGT GCGCGAGCGC
CTCACCGCGC ACGAGCACGA CGCCGCCTCG GGCACATCCG GCACATCCGG CACATCCGGC
ACGTCCGGCA CGTCGGGTAC GCCCGGCGCC GGCCCGCCCA CGACGGCGCG AACCGCGGAG
GCGTCGCCGC CGGCCGGCGC GCCCCCCCGG GCGACTCCCG GTTCCGCGTA A
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| Protein sequence | MKPARPRPPR RILARFVAVS WRDLALSIGP TVLLAGTAVW LAVKLIQPAP PSTLVISSGP
PGSTYWNAAQ KYKAILAKNG VTLDVESSEG SAQNLERLSN PNAPVDVGFV QSGIGPKERD
EHLVSLGSIG YVPLAIMYRG PIVARLSDFK GKRLALGAEG SGARELSLAL LKMNGIVPGG
ATELLPTAGE DAATALLDGK IDAAFLSGDS TQIPVMAKLF RAPGVHVYSF TQAEAYARRF
PYLTAITLPM GVYDLGRNLP PADIHTVAPT IELVARDTLH PALSDLLIEA AREVHGHATI
LQHAGEFPSA VTRGFPLSDD AARYYKSGKT FLYRRLPFWV ASLVDRMLVV LVPLIVVLIP
GLRLVPSLYG WRVRSRIYRW YGALIALERR ALGEHTAEER VQLLDELDDI EEAVNRMKMP
LAYAGQFYVL REHIGFVRER LTAHEHDAAS GTSGTSGTSG TSGTSGTPGA GPPTTARTAE
ASPPAGAPPR ATPGSA
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