| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0702 |
|---|
| Symbol | |
|---|
| ID | 6178918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 788306 |
|---|
| End bp | 788866 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641680450 |
|---|
| Product | Tfp pilus assembly protein FimT-like protein |
|---|
| Protein accession | YP_001807414 |
|---|
| Protein GI | 172059762 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.686484 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGC ACCGGCAGGT CGTCGAAAAA AGCAGGCGCT GCGGCGGCGG CTTCACGCTC
GTCGAGCTGA TGGTCGCGAT CGCGCTGGCC GGGTCGATCG GGCTTTTCGC AGCACCCGCA
TTCAATCAAT GGCACGTGCG CGAACGCGTG GACGCCCGCT CGCGCGCGCT GCTCGGTGCG
CTGTCGTTCG CACGCACCGA GGCGACGCGT CTCGGCGTGC GCGTCACGCT GTGCCGAGCC
GGGCGCGATG GCGACTGCAT GCGTTCCGGC GAGCGCTGCG ACCCCGCGGA ATGGTCGTGC
GGCTGGATCG TCAGCGGGCA GTTCGACGGA CAGTCGCGGG TGCTGCGGCG TTATCCGCGC
GATGCCGACA TTGCCGTCGC GGGCATCGCG CACGATCTGG CGTTCGCGCC GCCGGCGGGC
CAGGTGATCG GCGGGATCAG GCGCTTCGAA TTGCGGCCGC AGCGCATGCT GTCCGGCGAC
GACGCACGCG TGTCGCGTTG CATCCGGATC GCGGCGGGCG GCCGGGCGCG CGTCGCCGCC
GGGCGTTGCG ACGCGGCATG A
|
|---|
| Protein sequence | MELHRQVVEK SRRCGGGFTL VELMVAIALA GSIGLFAAPA FNQWHVRERV DARSRALLGA
LSFARTEATR LGVRVTLCRA GRDGDCMRSG ERCDPAEWSC GWIVSGQFDG QSRVLRRYPR
DADIAVAGIA HDLAFAPPAG QVIGGIRRFE LRPQRMLSGD DARVSRCIRI AAGGRARVAA
GRCDAA
|
|---|
| |