| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0635 |
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| Symbol | secD |
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| ID | 6177212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 713816 |
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| End bp | 715837 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641680383 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001807348 |
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| Protein GI | 172059696 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGTT ATCCACTCTG GAAATATGTC GTGATGGTCG TGGCGCTCGC CATCGGCTTT
CTGTACACAT TGCCCAACTT CTTCGGCGAA GCGCCGGCGG TGCAGGTGTC GAGCGGCAAG
GCCACGGTCA AGCTCGACTC GACCACGCTG ACCCAGGTCG AATCCGCGCT CGCGTCCGCG
CAGATCAAGC CGGACGACAT CACCTTCGAG AACACGGCGT CCAACGCGAA CATCCGCGTG
CGCCTGAAGG ACACCGATAC GCAGCTGCGC GTCAAGGACC TGCTGCAGAA ATCGCTGAAC
GCCGATCCGA ACGATCCGCA GTACGTCGTC GCACTGAACC TGCAGAGCGC GTCGCCGCGC
TGGCTGACTG CCTTGCACGC ACTGCCGATG TATCTCGGCC TCGACCTGCG CGGCGGTGTC
CACTTCCTGC TCCAGGTCGA CATGACGGGC GCGCTGACGA AGAAGCTCGA CTCCGACGCA
TCCGACGCAC GCGCGCTGCT GCGCGACCGG AACATCCGCG ACGGCGGCGT GAGCCGCGTC
GACCAGTCCG TCGTCGTCAA CTTCAGCGAT GCGCAAACGG CCGAAGACGC CCGCAAGGTG
CTCGCCGCGT CGGTCACCGA ACTGCAATGG GCGACCCAGC CCGGCGGCGG CGGCACGCAG
GTCGTCGGCA CGTTCACGCC GGCCGTGCAG AAGTCCGTCG AGGACGCCGC GCTCAAGCAG
AACCTGACGA CGCTCCACAA CCGCGTGAAC GAACTCGGCG TGTCCGAGCC GATCCTGCAG
CAGCAGGGCA GCGACCGTAT CGTCGTCGAA CTGCCGGGCG TGCAGGACAC CGCGAAGGCG
AAGGACATCA TCGGCCGCAC CGCGACGCTC GAGGCGCGCC TCGCCGATCC GATCAACACT
CACCCGAACC CGAACGACCC CGTGCCGCCG GGCGAGGAGC TGTTCACGCA GGGCAACCAG
GCGCCCGTGC TGCTGAAGAA GGAAGTGATC TTCACCGGCG ACCGCATCAT CGATGCATCG
GCCGGCTTCG ACGAACACCA GCGTCCGTCG GTCAACATCC GCCTCGACTC GGCGGGCGGC
CGCTCGGTGC GCGCGGTATC GCGCGAGAAC ATCGGCAAGC CGATGGCGAT GGTGCTGTTC
GAGAAGGGCA AGGGCGAGGT GCTGACGGTC GCGACGATCC AGTCCGAACT CGGCGACCGC
TTCCAGATCA CGGGCCAGCC GACGCCGCAG GCAGCAGCCG ATCTCGCGCT GCTGCTGCGC
GCCGGTTCGC TCGCCGCGCC GATGGATATC ATCGAGGAAC GCACGATCGG CCCGAGCCTC
GGCGCGGACA ACATCAAGAT GGGCGTCCAC TCGGTGATCT GGGGCTTCTG CGCGATCGCC
GTGTTCATGA TCGCGTACTA CATGCTGTTC GGCGTGATCT CGGTGATCGG CCTGTCGGTC
AACCTGCTGC TGCTCGTCGC GGTGCTGTCG CTGATGCAGG CGACGCTGAC GCTGCCGGGT
ATCGCGGCAA TCGCACTCGC GCTCGGCATG GCGATCGACT CGAACGTGCT GATCAACGAG
CGCGTGCGTG AGGAACTGCG CGCCGGCCAG CCGCCGCAGC TCGCGATCCA GTCCGGCTAC
GCGCATGCGT GGGCGACGAT TCTCGACTCG AACGTCACGA CGCTGATCGC CGGCCTCGCG
CTGCTCGCGT TCGGCTCGGG CCCGGTTCGC GCGTTCGCGA TCGTGCACTG CCTCGGCATC
CTGACGTCGA TGTTCTCCGC GGTGTTCTTC TCGCGCGGGC TCGTCAACCT CTGGTACGGC
GGCCGCAAGA AACTGAAGTC GCTCGCGATC GGCCAGGTGT GGAGGCCGGA AGGCGCCACG
GCCGGCGCAT CGTTCACCGC GGCCGACGAA TCGACCGACA CCGCGCGCGC CGCGAAGCTC
GCCGCCCCCG CGAAGGGCAA CGCCCCGCGC GCCGGCAAGC CGCAGCTGCG CAACCGCGCG
CAGCAAGGCG TGTCGCCGAA GAAACCGGGC TCGACCCAAT AA
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| Protein sequence | MNRYPLWKYV VMVVALAIGF LYTLPNFFGE APAVQVSSGK ATVKLDSTTL TQVESALASA
QIKPDDITFE NTASNANIRV RLKDTDTQLR VKDLLQKSLN ADPNDPQYVV ALNLQSASPR
WLTALHALPM YLGLDLRGGV HFLLQVDMTG ALTKKLDSDA SDARALLRDR NIRDGGVSRV
DQSVVVNFSD AQTAEDARKV LAASVTELQW ATQPGGGGTQ VVGTFTPAVQ KSVEDAALKQ
NLTTLHNRVN ELGVSEPILQ QQGSDRIVVE LPGVQDTAKA KDIIGRTATL EARLADPINT
HPNPNDPVPP GEELFTQGNQ APVLLKKEVI FTGDRIIDAS AGFDEHQRPS VNIRLDSAGG
RSVRAVSREN IGKPMAMVLF EKGKGEVLTV ATIQSELGDR FQITGQPTPQ AAADLALLLR
AGSLAAPMDI IEERTIGPSL GADNIKMGVH SVIWGFCAIA VFMIAYYMLF GVISVIGLSV
NLLLLVAVLS LMQATLTLPG IAAIALALGM AIDSNVLINE RVREELRAGQ PPQLAIQSGY
AHAWATILDS NVTTLIAGLA LLAFGSGPVR AFAIVHCLGI LTSMFSAVFF SRGLVNLWYG
GRKKLKSLAI GQVWRPEGAT AGASFTAADE STDTARAAKL AAPAKGNAPR AGKPQLRNRA
QQGVSPKKPG STQ
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