Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0564 |
Symbol | |
ID | 6178103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 635815 |
End bp | 636651 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641680312 |
Product | integrase catalytic region |
Protein accession | YP_001807277 |
Protein GI | 172059625 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.22633 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.244778 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTCGAGC TAAGGCAGCA ATATCCGCTT GCGGGCTTGT TGAAGGTTGC CGGCTTGGCG CGCAGCACGT TCTACTATCA TCAGAAATTG CTCGGAGCAG CCGACAAGTA TGCCGATACA AGGGCGAGAA TCTGCTCGCT GTTCGAACGG CACAAGGGCC GCTACGGCTA TCGACGCATC ACGCTCGCTC TACGTAATCT GGGACAGGTG ATTAACCACA AGACTGTGGC GCGTCTGATG GGCGAGTTGC GGCTGAAGTC TTGTGTGCGC CCGAAGAAAT ACCGCTCCTA CAAAGGTAGC GTCGGACGTG TTGCACCTCA TGTTTTACAG CGTCGGTTCT ACGCAAAGCG TCCGAACGAG AAGTGGGTAA CGGATGTCAC GGAATTCAAC GTGGGCGGCC AGAAGCTGTA CCTGTCACCA GTGCTCGATC TGTACAACGG CGAGATCATT GCTTATGAAA CCGCGAGGCG CCCGGCGTTC GAGATGGTCA GCGCAATGCT TCGCAAGGCA TTGGCGCGCT TGAAGTCACA CGAGCGGCCT CTCTTGCATT CGGATCAGGG CTGGCAGTAC CAGATGCCAG CGTATCGCCG CCTACTGCAG CAACGAGCGC TCACGCAAAG CATGTCGCGT AAAGGGAATT GCCTGGACAA CGCCGCCATG GAGAGCTTCT TCGGCACGCT GAAATCCGAG TTCTTCCATC TGAATCGGTT CCGCAACCTG GACGAACTGC AATCCGGCTT GGCAAGCTAC ATCCACTACT ACAATCACGA CCGCATCAAA CTGAAACTAA AAGGGCTGAG TCCCGTGCAA TACAGAACTC AGCTCTCTCA GCCCTAG
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Protein sequence | MLELRQQYPL AGLLKVAGLA RSTFYYHQKL LGAADKYADT RARICSLFER HKGRYGYRRI TLALRNLGQV INHKTVARLM GELRLKSCVR PKKYRSYKGS VGRVAPHVLQ RRFYAKRPNE KWVTDVTEFN VGGQKLYLSP VLDLYNGEII AYETARRPAF EMVSAMLRKA LARLKSHERP LLHSDQGWQY QMPAYRRLLQ QRALTQSMSR KGNCLDNAAM ESFFGTLKSE FFHLNRFRNL DELQSGLASY IHYYNHDRIK LKLKGLSPVQ YRTQLSQP
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