Gene BamMC406_0559 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0559 
Symbol 
ID6177976 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp630078 
End bp630845 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content75% 
IMG OID641680307 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001807272 
Protein GI229597240 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.43555 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAG CCACCACCAC CGCGGCCGTG CCGCGTTTCT TCGTCGAAGC GGCGCTGCGC 
GCCGATGCGA CGCTCACGCT GCCGGCCGAG GTCGCGCGTC ACGCGCAGGT GCTGCGGCTG
CAGCCCGGCG ACACGCTCGC ACTGTTCGAC GGCAGCGGCG GCCAGTACCG CGCGCGGCTC
GTCGAGATCG ACAAGCGCAA CGCGCTCGCG CAGATCGAGG CGTTCGACCC GGCCGAGGCC
GAGCCGCCGT ATCGCGTGAC GCTCGCGCAG GGCATCGCCG GCGGCGACAA GATGGACTGG
GTCATCGAGA AAGCCGTCGA GCTCGGCGTC GCGGCGGTCG TGCCGCTGTC GACCGCGCGC
GGCGTCGTGA AACTGTCGGG GGAGCGCGCG GACAAGCGCG TCGCGCACTG GCGCGGCGTC
GTGCGCGCGT CGTGCGAACA GTGCGGACGC AACCGCGTGC CCGACGTCGC GCCGGTACGC
GGCTTCGGCG CGTGGCTCGA TACGCTGCCG GCCGCGCCGG CCGACGGCGA GCTGCGGCTG
CTGCTGTCGC CGCGCGCGAG CGTCCCGTTC GCGTCGCTGC CCGACGCGCC GCCCGCGGCT
GAAGTCACGC TGCTGATCGG GCCGGAAGGC GGTCTGTCGC CGGACGAAGA AAACGCGGCC
CGCGCGCACG GGTTCACGGC GTTGTCGCTC GGGCCACGCG TGCTGCGCAC CGAGACGGCC
GGCGCGGCCG TGCTCGCCGC GCTCGCGGCA CGCTGGGGCG GGTGGTAA
 
Protein sequence
MSEATTTAAV PRFFVEAALR ADATLTLPAE VARHAQVLRL QPGDTLALFD GSGGQYRARL 
VEIDKRNALA QIEAFDPAEA EPPYRVTLAQ GIAGGDKMDW VIEKAVELGV AAVVPLSTAR
GVVKLSGERA DKRVAHWRGV VRASCEQCGR NRVPDVAPVR GFGAWLDTLP AAPADGELRL
LLSPRASVPF ASLPDAPPAA EVTLLIGPEG GLSPDEENAA RAHGFTALSL GPRVLRTETA
GAAVLAALAA RWGGW