| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0497 |
|---|
| Symbol | |
|---|
| ID | 6177839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 563878 |
|---|
| End bp | 566673 |
|---|
| Gene Length | 2796 bp |
|---|
| Protein Length | 931 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641680244 |
|---|
| Product | preprotein translocase subunit SecA |
|---|
| Protein accession | YP_001807210 |
|---|
| Protein GI | 172059558 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
|---|
| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.433884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.665829 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCG GTTTTCTCCA GAAAATTTTT GGCAGCCGCA ACCAGCGGCT CGTCAAGCAA
TATCAAAAGA CCGTCGAGAC GATCAATGCG CTCGAAACGC AGATCGAGCA GCTGACGGAC
GACCAGTTGC GCGGCAAGAC GGACGAGTTC CGCCAGCGGG TCGCGGCCGG GGAGTCGCTC
GACAAGCTGC TGCCCGAGGC GTTCGCGGTC TGCCGGGAGG CGAGCCGCCG CGTGCTGAAG
ATGCGCCACT TCGACGTGCA GTTGATCGGC GGCATGGTGC TCCACTACGG CAAGATCGCG
GAAATGCGCA CCGGCGAGGG CAAGACGCTC GTCGCGACGC TGCCCGTGTA CCTGAATGCG
CTGGCTGGCC GCGGCGTGCA CGTCGTGACG GTCAACGACT ACCTCGCCCA ACGCGACGCC
GAATGGATGG CGCGTCTCTA CAACTTCCTC GGTCTGTCGG TCGGCATCAA CCTGTCCGGC
ATGGAGCACG AGCAGAAGCA GCAGGCCTAC GCGTCGGACA TCACCTACGG TACGAACAAC
GAGTTCGGCT TCGACTACCT GCGCGACAAC ATGGTCTACG AGACCGAGGC GCGCGTGCAG
CGGGCACTGA ACTTCGCGGT CGTCGACGAA GTGGACTCGA TCCTGATCGA CGAGGCGCGT
ACGCCGCTGA TCATCTCGGG CCAGGCCGAA GATCACACCG AACTGTACGT GCGGATGAAC
GCGCTGCCGC CGCTGCTCGA GCGCCAGATC GGCGAGGAGA AGGCCGACGG CACCGGCGTC
GAGAAGCCGG GTGACTACAC GCTGGACGAA AAATCGCGCC AGGTGTTCCT GACGGAGTCG
GGCCACGAGA AGGCCGAGCG GCTGCTCGCC GAGTGGGGCC TGATCGGTGA GGGCGAGAGC
CTGTACGCGC CGCAGAACAT CACGCTGATG CACCACGTCT ACGCGGCGCT GCGCGCGCAC
ACGCTGTTCT ACAAGGACCA GCACTACGTC GTGCAGAACG GCGAAGTGGT GATCGTCGAC
GAATTCACGG GCCGCCTGAT GGCGGGCCGC CGCTGGTCCG ACGGCCTGCA CCAGGCGGTC
GAGGCGAAGG AGCACGTGAA GATCCAGAGC GAGAACCAGA CGCTCGCCTC GATCACGTTC
CAGAACTACT TCCGGATGTA CGCGAAGCTC GCGGGCATGA CGGGTACGGC GGACACCGAA
GCGTACGAAT TCAACGAGAT CTACGGCCTC GAGACGGTCG TGATCCCGAC CAACCGCCCG
CCGAAGCGGA TCGACAAGCA GGACCAGATC TACAAGACCG CCAAGGAGCG CTACGACGCG
GTTATCCGCG ACATTCGCGA GTGCTACGAG CGTGGTCAGC CGGTGCTGGT CGGCACGACG
TCGATCGAGA ACTCGGAACT GCTGTCGCAC CTGCTGAAGC AGGCCGGGCT GCCGCACGAA
GTGCTGAACG CGAAGCAGCA CGAGCGCGAA GCTGCGATCG TCGCGGAAGC CGGCCGTCCG
AAACGCATCA CGATCGCGAC CAACATGGCC GGCCGCGGTA CCGACATCGT GCTCGGCGGC
AACGCCGAGA AGCAGGCGGC GTTCATCGAA GCCGACGAAG CGATTCCGGC CGACGAAAAG
GCGCGCCGCA TCAAGCAGCT GCACGACGAG TGGGAGACGC TGCACGAGCA GGTGAAGGCC
GCGGGCGGCC TGCACATCAT CGGCACCGAG CGCCATGAAT CGCGCCGGAT CGACAACCAG
CTGCGCGGCC GTGCGGGCCG TCAGGGCGAC CCGGGTTCGT CGCGCTTCTA CCTGTCGCTG
GACGATCCGC TGCTGCGCAT CTTCGCGGGC GACCGCGTGC GTTCGATCAT GGATCGCCTG
AAGATGCCCG AAGGCGAGGC GATCGAGGCC GGCATCGTCA CGCGTTCGAT CGAATCCGCG
CAGCGCAAGG TCGAAGCACG CAACTTCGAC ATCCGCAAGC AGCTGCTCGA ATACGACGAC
GTGTCGAACG ACCAGCGCAA GGTGATCTAC CAGCAGCGCA ACGAACTGCT CGAAGCCCAC
GACATCACCG AGACGATCTC GGCGATGCGT CACGGCGTGA TCACCGAAGT CGTCCGCCAG
TTCGTGCCGG AAGGCAGCAT CGAGGAACAG TGGGACGTGC CCGAGCTCGA GGAAGCGCTG
CGCAACGACT GGCAGCTCGA CCTCGCGATC CAGGAAATGG TGAACGAGTC GTCGTCGATC
ACGGCCGACG AGATTCTCGA CGCCGTGACG ACCGCCGCCG ACGAGCAGTA CGAGGCGAAG
GTCGCGATGG TCGGCCGCGA ATCGTTCAGC GCGTTCGAGC GTTCGGTGAT GCTGCAGACG
GTCGACCGCC TCTGGCGCGA GCACCTCGCG GCGCTCGACC ACCTGCGCCA GGGCATTCAC
CTGCGCGGCT ATGCGCAGAA GAACCCGAAG CAGGAATACA AGCGCGAAGC GTTCGAGCTG
TTCGCCGCGA TGCTCGATGC GATCAAGCAG GAAGTCACGC GCATCGTGAT GAACGTGCAG
ATCCAGTCGC CCGAGCAGCT CGAGGAAGCC GCCGAGCAGA TCGAGGAGCG CAGCGGTCAT
CTCGAGAACG TCGAGTATCA GCACGCCGAC TACGCGGAAT CCGGCGCACC GGTGGCGAAC
GTCGCGGCCG CCACGGCGGC CACCGCGACG GCCGACATGG TCGGCAGCGC GATGACCCAC
GGCCACGGCG GCGAGCTGCC GAAGGTCGGC CGCAACGATC CGTGCCCGTG CGGCAGCGGC
AAGAAGTACA AGCAATGTCA CGGGAAGCTG TCATGA
|
|---|
| Protein sequence | MTTGFLQKIF GSRNQRLVKQ YQKTVETINA LETQIEQLTD DQLRGKTDEF RQRVAAGESL
DKLLPEAFAV CREASRRVLK MRHFDVQLIG GMVLHYGKIA EMRTGEGKTL VATLPVYLNA
LAGRGVHVVT VNDYLAQRDA EWMARLYNFL GLSVGINLSG MEHEQKQQAY ASDITYGTNN
EFGFDYLRDN MVYETEARVQ RALNFAVVDE VDSILIDEAR TPLIISGQAE DHTELYVRMN
ALPPLLERQI GEEKADGTGV EKPGDYTLDE KSRQVFLTES GHEKAERLLA EWGLIGEGES
LYAPQNITLM HHVYAALRAH TLFYKDQHYV VQNGEVVIVD EFTGRLMAGR RWSDGLHQAV
EAKEHVKIQS ENQTLASITF QNYFRMYAKL AGMTGTADTE AYEFNEIYGL ETVVIPTNRP
PKRIDKQDQI YKTAKERYDA VIRDIRECYE RGQPVLVGTT SIENSELLSH LLKQAGLPHE
VLNAKQHERE AAIVAEAGRP KRITIATNMA GRGTDIVLGG NAEKQAAFIE ADEAIPADEK
ARRIKQLHDE WETLHEQVKA AGGLHIIGTE RHESRRIDNQ LRGRAGRQGD PGSSRFYLSL
DDPLLRIFAG DRVRSIMDRL KMPEGEAIEA GIVTRSIESA QRKVEARNFD IRKQLLEYDD
VSNDQRKVIY QQRNELLEAH DITETISAMR HGVITEVVRQ FVPEGSIEEQ WDVPELEEAL
RNDWQLDLAI QEMVNESSSI TADEILDAVT TAADEQYEAK VAMVGRESFS AFERSVMLQT
VDRLWREHLA ALDHLRQGIH LRGYAQKNPK QEYKREAFEL FAAMLDAIKQ EVTRIVMNVQ
IQSPEQLEEA AEQIEERSGH LENVEYQHAD YAESGAPVAN VAAATAATAT ADMVGSAMTH
GHGGELPKVG RNDPCPCGSG KKYKQCHGKL S
|
|---|
| |