Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0495 |
Symbol | lpxC |
ID | 6178142 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 562136 |
End bp | 563053 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641680242 |
Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
Protein accession | YP_001807208 |
Protein GI | 172059556 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000405004 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAAGC AGCGCACCAT CAAATCGATC GTGAAGACCG TGGGTATCGG TCTCCACTCG GGCCGCAAGA TTGAACTGAC GCTCCGTCCC GCCGCGCCGG GCACGGGCAT CGTCTTCTCG CGCATCGACC TGCCTACGCC CGTCGACATT CCCGCATCGG CGATGTCGAT CGGCGACACG CGGCTCGCGT CGGTGCTGCA GAAGGATGGT GCGCGCGTGT CGACGGTCGA GCACCTGATG TCGGCATGCG CTGGCCTCGG CATCGACAAC CTCTATGTCG ACGTGACGGC CGAGGAAATC CCGATCATGG ACGGCAGCGC GGCGACCTTC GTGTTCCTGA TCCAGTCCGC CGGCATCGAG GAGCAGAACG CGCCGAAGCG CTTCATCAAG GTGACGAAGC CGGTTGAAAT CCGCGACGGC GACAAGTTCG CGCGTCTCGA TCCGTATTTC GGTTTCAAGC TGAAGTTCTC GATCGACTTC CGCCACCCGG CCGTCGACAA GACGGGCCAG GAGCTCGAGG TCGACTTCGC GAATACGTCG TACGTGCGCG AGATCGCACG CGCGCGTACG TTCGGCTTCG CGCATGAAGC CGAGATGCTG CGCGAGCTGG GCCTGGCGCG CGGCGGCAGC ATGGACAACG CGATCGTGCT CGACGAGTAC CGGATCCTGA ACAACGACGG GCTGCGCTAT GACGACGAGT TCGTGAAGCA CAAGATGCTC GACGCGATCG GCGACCTGTA CGTGGTCGGC CATCCGCTGC TGGCGTCGTA CACGGCATAC AAGTCGGGTC ACGGGCTGAA CAACGCGCTG CTGCGCGAGC TGCTTGCCCA CGAAGACGCG TACGAGATCG TCACGTTTGA CGATCCGCAG GCCGCGCCGA AAGGATTTGC ATTCGACGCG CAGACGGCCT TCGCCTGA
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Protein sequence | MLKQRTIKSI VKTVGIGLHS GRKIELTLRP AAPGTGIVFS RIDLPTPVDI PASAMSIGDT RLASVLQKDG ARVSTVEHLM SACAGLGIDN LYVDVTAEEI PIMDGSAATF VFLIQSAGIE EQNAPKRFIK VTKPVEIRDG DKFARLDPYF GFKLKFSIDF RHPAVDKTGQ ELEVDFANTS YVREIARART FGFAHEAEML RELGLARGGS MDNAIVLDEY RILNNDGLRY DDEFVKHKML DAIGDLYVVG HPLLASYTAY KSGHGLNNAL LRELLAHEDA YEIVTFDDPQ AAPKGFAFDA QTAFA
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