Gene BamMC406_0430 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0430 
Symbol 
ID6177708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand- 
Start bp485355 
End bp485978 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content68% 
IMG OID641680172 
ProductTetR family transcriptional regulator 
Protein accessionYP_001807143 
Protein GI172059491 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.469108 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGGCA TCGAGGCCGT CAACAAGCCG CCGGCACGCC GCACGCGCCG GCCGATCGCC 
GCGGCCGCGG CGCACGAACA CCTGCTGCGC GCCGCCGAGG AGCTGTTTTA CAAGGAAGGG 
GTGCGCGCGG TCGGTGTCGA GGCGGTCGTG GAACTCGCGG GCGTCAACAA GATGAGCCTG 
TACCGCCAGT TCTCGTCGAA GGACGAGCTG ATCCTCGCGT ATCTGGAGCG GATGGATGCG 
TGCTTCTTCG AGCGCTTCGA TTCGAGCATC GCGAAGCATC CGGGCCAGCC GAAGGCGCAG 
TTGATCCAGT ATTTCGTCGA TCTCGCGGAG CGCGCGACGC AGAAGGACTA TCGCGGCTGC 
CCGTTCGTCA ACGTCGCGGC CGAATTCCCC GATGCGTCGC ACCCGGCGCG CGAGCGCGTC 
GCGCAGAACA AGGAACAGTT GATGAAGCGG CTCGTCGCGT TGTGCGAAAG CGCCGGCGCA 
CGGCAGCCGC AAGCGCTCGC CGATGCGCTC GCGCTGGTGG TCGAAGGCAT CTACGCGGCC 
AGCCAGACCT ACCGGCACGG CGAAACGCCG ATCGGCACCG CGCCCGCGCT GGTCACGCAG 
CTGATCGAAG CCGGCTGCGC GTGA
 
Protein sequence
MSGIEAVNKP PARRTRRPIA AAAAHEHLLR AAEELFYKEG VRAVGVEAVV ELAGVNKMSL 
YRQFSSKDEL ILAYLERMDA CFFERFDSSI AKHPGQPKAQ LIQYFVDLAE RATQKDYRGC 
PFVNVAAEFP DASHPARERV AQNKEQLMKR LVALCESAGA RQPQALADAL ALVVEGIYAA 
SQTYRHGETP IGTAPALVTQ LIEAGCA