| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0420 |
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| Symbol | |
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| ID | 6176746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 471529 |
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| End bp | 475470 |
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| Gene Length | 3942 bp |
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| Protein Length | 1313 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641680162 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001807133 |
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| Protein GI | 172059481 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.419198 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.652814 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGCA TCCTCAACGT GCTGACTCAT CCGCGTACGC TCTCGATTGT CGGGATCGTC
GCGCTAGCGG CGATTCTCTT CATCGTCGCC GACATGGTGC AGCTGCCGCT CCTGTGGGCG
GCGCTCGCCT TCGCGGCGAT CCTCGTGCTG TGGCTCGGCG TCGCGTTGTG GCGCCGCTGG
CGCGTGAAGC GCGCGAACCA GCAACTCGGC CAGGTGCTGG AGGAGCAGGC GGAAACCGGC
AAGATCGCCG CGCCGGCCGC GGCCGCGCTC GCGCCCGACT CGAAGACCGC CGACCTCGAC
GTGCTGCGCA CGCGCCTGTC CGACGCGGTG AAGACGATCA AGACGTCGAA GATCGGCCAG
GTGTCGGGCG GCTCCGCGCT GTACGAACTG CCGTGGTACA TCGTGATCGG CAACCCGGCC
GCGGGCAAGA GCAGCGCCGT GCTGAACTCC GGCCTGCAGT TTCCGTTCGC GGACAAGAAC
AGCGCCGTGA TCCACGGCAT CGGCGGCACG CGCAACTGCG ACTGGTTCTT CACGACCGAG
GGGATCCTGC TCGACACGGC CGGCCGCTAC TCGGTGCACG AGGAAGACCG CAGCGAATGG
CTCGGCTTCC TCGGCCTGCT CAAGCGCTAC CGTCCGAAGG CGCCGATCAA CGGCATCATC
GTCACCGCGA GCATCGCCGA ACTCACCGGC AACCGCCCCG AATTTGCGAT CAACCTCGCG
AAAAACCTCC GTCAGCGCGT TCAGGAGCTC ACGGAAAAGC TCGAGGTGTT CGCGCCGGTC
TACGTGATGT TCACGAAGGC CGACCTGATC ACCGGCTTCA CCGAATTCTT CAGCAGCAGC
GACAAGCACG AGTACGACCG CGTGTGGGGC GCCACCCTGC CCTACGAACC GGACGAGAAG
CGTGACGTGG TCGCGCTGTT CGACGAGCGC TTCGAGGAAC TGTACGAAGG GCTGAAGGAA
ATCAGCGTCG CGCAGCTGTC GCTGTCGCGC GGCAACCAGC TGTCGCCCGG CCAGTTGAGC
TTCCCGCTCG AATTCTCGAC GATCAAGCCG TCGCTGCGCG CGTTCCTCGC GACGCTGTTC
GAGAACAACC CGTTCCAGTA CAAGCCGATC TTCCGCGGCT TCTACTTCAC CAGCGCGCTG
CAGGAAGGCG AAACCAACAG CGCCGCCGCG CAGCGCATCG CGCACCGCTT CGGCCTCGAC
GCGAGCGCGC TGCCGAAGCC GCACAGCGCG TTCTCGAAGA ACGGCTTCTT CCTGCGCGAC
CTGTTCTCCA AGGTGATCTT CGCGGATCGC CAGACTGTGC GCCAGTTCGC GAGCCCGACC
AAGACCCGGT TGCGCTACGC GACCTTCTTC GGCTTCGTCG CGGCCCTCGC GCTCGCCCTC
GGCGGCTGGA CCTGGTCGAC GATCGGCAAC CAGCAGCTCG TCGCGAACGT GCAGGCCGAC
CTCGACAACG TCACGCGCCT CCAGCAGGGC CGCAACGACC TGCAGTCGCG CCTGCAGGCA
ATGGACATCC TGGAAGACCG TATCGAACAG CTCGAGCAGT TCCGCCGCGA CAAGCCGGTA
TCGGTGTCGC TCGGCCTGTA CCAGGGCGAC CGTCTCGAGC AGCATCTGCT GACCGAGTAC
TACAACGGCG TGCGCCAGAT CCTGCTCGCG CCGGTCTCGC AGAACCTCGC GTCGTTCATG
AAGGACGTGA ACGCGCACCC CGAACAGCTC GTGCCGATGA CGCGCCCGCC CGAATCGGGT
GCCGTGCAGG GCGGCGCGCT GCCGGTCTCG ACGAACCCGC CGGGCGCCGC ACCGCCGGCC
GGCGCCGCGC AAGGCGCATC CGCCGCGACG GCCGCCGCGC CGCAACAGCC GGCCGCGCCG
CAGGGCGGGC TGTACAGCGA CGCGTCGCCG ACCAACGTGC AGGACGCGTA CAACGCGCTG
AAGACCTACC TGATGCTGTC CGACAAGCGT CATGTCGAAC AGGCGCACCT GACCGACCAA
CTCGCCCGCT TCTGGCGCGG CTGGCTCGAG ACGAATCGCG GCAACATGCC GCGCGACGAG
ATGATCAAGA GCGCCGAGCG CATGATCTCG TTCTATCTGT CGCGCGTGAC CGACGATGAC
TGGCCGATGA TCGACGCGAA CCTCGCGCTC GTCGACCAGA CCCGCGAGAA CCTGCGCCGC
GTCGTGCGCG GCATGCCGGC CCGCCAGCGC GTCTACGAGG AAATCAAGGC GCGCGCGTCG
ACCCGTTTCG CGCCGATGAC CATCGCGCGC ATCGTCGGCG ACGGCAACCA GGGACTGGTC
GCCGGCAGCT ACGCGATTCC GGGCACGTTC ACGCGTGAAG CATGGTTCGA CTACGTGCAG
CCGGCGATCC GCGACGCGGC GACCAAGGAG CTGCAGGCGA AGGACTGGGT GCTGAACACG
TCGACGCAGG ACGACCTGAC GCTGGAAGGC AGCCCCGAGC AGATCCAGAA GACCCTCGTC
GGGATGTACA AGACCGAGTA CGCGCAGCAC TGGCAGAAGT TCATGCAGGG CATCGCGGTG
CAGGGTTTCA GCAGCTTCGG CCAGGCCGTC GACGGGATGA ACCGCCTCGG CGACCCGCAG
GATTCGCCGA TCCGCAAGAT CCTCGAGACC GCGTACGACC AGACGTCGTG GGACAACCCG
TCGCTCGCGA ACGTGACGAT CAAGAAGGCG CAGACGGGTG TCGTGAACTG GGTCAAGCAA
CTGTTCACGC GCTCGCAGGC CGGCCAGATG GCGGCCGCGA ACATCGACAT CAACGGCAAT
CCGGCCGAGG TGCCGATGGG TCCGATCGGC CAGGAGTTCA TCGGGCTCGC GCGGATCGTC
GCGACGCACG ACGGCACGTC GATGCTCAAG GGCTACATGG ATTCGCTGTC GAAGGTGCGC
ACGCGCTTCA ACGTGATCAA GAACCAGGGC GACCCCGGCC CCGGCGCGCG CCAGCTGATG
CAGCAGACGC TCGACGGCAA CGGCTCGGAA CTCGCCGATT CGCTGAAGTT CGTCGACGAG
CAGATGCTGA CCGGCCTCAC CGATTCGCAA CGCAAGTCGC TGCGTCCGCT GCTGGTGCGC
CCGCTGATGC AGGCGTTCTC GGTGGTGATC CAGCCGGCCA GCGCCGAAGT CAACAAGGTG
TGGAACGCGC AGGTCTACCA GCCGTTCCAG AGCTCGCTCG CGACGAAGTA CCCGTTCGCC
GCGAATGCGA AGGTCGAGGC CGGCGCAGGT GAAATCGCGC AGGTGTTCGG CCCGGACGGT
GCGATCGCCA AGTTCGTCGG CACGACGCTG GGGCCGCTCG CGGTGCGCCG CGGCGACACG
CTCGCGGCCC GCACGTGGGG CGACATGGGC ATCGGCCTCA CGCCTGACTT CACGAACGGC
TTCGCGCGCT GGGTCGCCCC GCTCGCCGGC GGCGCCGCAG GCGGCGCGGC CGCGGCGGCC
GAACCGCAGA CCGTGTTCCA GATCCTGCCG CAGCCGAGCA CGGGCACGAC GGAATACACG
ATCGCGATCG ACGGCCAGCA ACTGCGCTAC CGCAACACGC CGCCGCAGTG GACCAATTTC
GTGTGGCCGA ACCCGCAGGG TTCGCCGGGC GCGACGCTGT CCGCGACGAC CTTCGACGGC
CGCACGGTGC AGCTCGTCAA CGAGCCGGGC CGCTACGGTC TCGAGAAGCT GATCAACTCC
GCGCAGCGCA AGCGCCGCCC GGACGGCACC TTCGACCTCA CGTGGGTCCA GGGCAGCGTG
AACGTGTCGG TGACGATGCG TATCATCAGC ACGTCGCAGC CGACGGGCGG CGGCGGCGAC
CAGCCGCAGC AGCAGAGCCT GCGCGGCCTG CAGCTCCCGT CGTCGGTCGC CGACGCGAGC
GCGGGCGCGG CACAGAACGC GACGCAGGCC GGCAACGGCG CGCCGGCCGC GGCACCGGCC
GTCACGGCCG CCACCGCAAC GAATGCACAG GGGGCGCAAT GA
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| Protein sequence | MQRILNVLTH PRTLSIVGIV ALAAILFIVA DMVQLPLLWA ALAFAAILVL WLGVALWRRW
RVKRANQQLG QVLEEQAETG KIAAPAAAAL APDSKTADLD VLRTRLSDAV KTIKTSKIGQ
VSGGSALYEL PWYIVIGNPA AGKSSAVLNS GLQFPFADKN SAVIHGIGGT RNCDWFFTTE
GILLDTAGRY SVHEEDRSEW LGFLGLLKRY RPKAPINGII VTASIAELTG NRPEFAINLA
KNLRQRVQEL TEKLEVFAPV YVMFTKADLI TGFTEFFSSS DKHEYDRVWG ATLPYEPDEK
RDVVALFDER FEELYEGLKE ISVAQLSLSR GNQLSPGQLS FPLEFSTIKP SLRAFLATLF
ENNPFQYKPI FRGFYFTSAL QEGETNSAAA QRIAHRFGLD ASALPKPHSA FSKNGFFLRD
LFSKVIFADR QTVRQFASPT KTRLRYATFF GFVAALALAL GGWTWSTIGN QQLVANVQAD
LDNVTRLQQG RNDLQSRLQA MDILEDRIEQ LEQFRRDKPV SVSLGLYQGD RLEQHLLTEY
YNGVRQILLA PVSQNLASFM KDVNAHPEQL VPMTRPPESG AVQGGALPVS TNPPGAAPPA
GAAQGASAAT AAAPQQPAAP QGGLYSDASP TNVQDAYNAL KTYLMLSDKR HVEQAHLTDQ
LARFWRGWLE TNRGNMPRDE MIKSAERMIS FYLSRVTDDD WPMIDANLAL VDQTRENLRR
VVRGMPARQR VYEEIKARAS TRFAPMTIAR IVGDGNQGLV AGSYAIPGTF TREAWFDYVQ
PAIRDAATKE LQAKDWVLNT STQDDLTLEG SPEQIQKTLV GMYKTEYAQH WQKFMQGIAV
QGFSSFGQAV DGMNRLGDPQ DSPIRKILET AYDQTSWDNP SLANVTIKKA QTGVVNWVKQ
LFTRSQAGQM AAANIDINGN PAEVPMGPIG QEFIGLARIV ATHDGTSMLK GYMDSLSKVR
TRFNVIKNQG DPGPGARQLM QQTLDGNGSE LADSLKFVDE QMLTGLTDSQ RKSLRPLLVR
PLMQAFSVVI QPASAEVNKV WNAQVYQPFQ SSLATKYPFA ANAKVEAGAG EIAQVFGPDG
AIAKFVGTTL GPLAVRRGDT LAARTWGDMG IGLTPDFTNG FARWVAPLAG GAAGGAAAAA
EPQTVFQILP QPSTGTTEYT IAIDGQQLRY RNTPPQWTNF VWPNPQGSPG ATLSATTFDG
RTVQLVNEPG RYGLEKLINS AQRKRRPDGT FDLTWVQGSV NVSVTMRIIS TSQPTGGGGD
QPQQQSLRGL QLPSSVADAS AGAAQNATQA GNGAPAAAPA VTAATATNAQ GAQ
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