| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0410 |
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| Symbol | |
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| ID | 6178300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 460526 |
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| End bp | 463087 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641680152 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001807123 |
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| Protein GI | 172059471 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGTGA CCGAACTGGC ACAGGCGATT CGCGGCGGCC TGATTCAGCG CGACCGCCTG
CTGAAGACGG ACATCCCGTC GCTGCCGAGC AATGCGCTCG TGCCGCGCCG CGCGGTGACG
CGTTCCGAGC TCGGCCGCGA CTTCGGGGTT GTTCTCGACC TGGTATCCAC CGCGAGCGAC
ATCGAGCTCA AAATGCTCAT CGCGCAGCCG ATCACGCTGT GGATCCAGCA GGCCGACAAG
TCGTATCTGC CGATCAACGG TTATATCCAC ACGGCGCGCC GGCTCGGCGC GGACGGCGGC
CTGTCAAGTT ACCAGCTGCG CTTTGCGTCG TGGATGCACT TCCTCAAGTT CCGCAGCGAC
ATGCGGTACT GGCAGGACAA GTCCGTCGAC GCGATCCTCG CCGATGTGTT CGACAACCAT
CCGCAGGCAA AGGGCCAGTA CCAGTTCGCG CTGTCGAAGC CGTTGCCGTC CCGGTCCTAC
TGCCGGCAGA GCGAAACCGA CTGGAACTTC GTGCACCGGC TGATGGAGGA CGAAGGGCTG
TTCGGTTTCT GGCGGCACAG CGAAGACGGG AAGGCGCACA CGCTCGTCAT CACCGATGAC
CTGCATGCGA TCGACGCGCT GTCGCCGAAT GCCGTAACCT TCGACCGGTC GGGGACGGGC
ACCGAAACGG CCGGTTTAAC GCAATGGGCC GCGTCGCGGA CATTGCAAAG CACGCAGCAC
ACGACGCGTA CGTTCGACTA CAAATCGCCG TCGTCGGCGG GCAGTCCGAA CGGCACGACG
CTGCCGACGA AGGCCGGCCA GGGTGATCTG CCGGGCCAGG CGGAAATCTA CGAATACACG
GGCGCGTATA CGTATCCGGG CCAGGCGCGC GGCGAACATC TGTCGAAGAT TCGTCTCGAG
GAGTGGGAGT CGCGCGCGAA GCGCTTCTTC GGCGCGGGCG GCGTGCGCGC GATCGATGCC
GGCCGACGCT TCACGCTGAC CGGTCATCCC GAGCACGATC GCGATTCGGC CGGCGATCGC
GAGTTCGCGG CCATCGCCGT CGCGCGATAC ATCGAGAACA ATCTGCCGAT CTCGGACCAC
GAGGCGACCT TCCCGCATAG CCTGCAGGAC CAGCTGGCGC AGGTGAAGGC CTGTCATGCA
GATGCGGCTG CGTTCGAGGT CGGGCATGAC GACGGCTCCG CCGGGTTTTA TCTCGTCGAG
GTCGAGGCGC AGCGCGCGAG CGTGCCGTAT CGGAGCCCCT TCGAGCATCG CAAGCCCGCG
ATGCAGCTCG AGACGGCCGT CGTCGTCGGC CCGAAGGGCG AGGAGGTTTA CACGGACGAG
CTGAACCGGA TCAAGGTCAT GTTCGTCTGG GATCGGCAGA GCGAAGGGCG CGAGAATGCG
TCGTGCTGGA TGCGCGTCGT GCAGTCCGAT ACCGGTGGCG GTTACGGCGC CGTTCATATT
CCGCGAGTCG GAGAGGAAGT GCTGATCGGC TACATCGGCG GCGACTGCGA CCGGCCGATC
GTGATGCACC GCGTCTACAA CGGGGCCGTC AAGCCGCAAT GGCATAGCGA CGGGATCCTG
TCGGGCTTCC GCTCGAAGGA GTATGCGGGA TCGGGGCACA ACGAGATGGT GCTCGACGAC
GCGACCGGGC AGAACCGCGC GCGCCTGTTC AGCAGCAGCG CGAATTCGCT GCTTCATCTC
GGCTATCTGA TCGAGCAGAA CGGCAACACG CGCGGCGCGT ATCTCGGCTC GGGCTTCGAT
CTGCGCACCG ACGCGTACGG CGCGATGCGT GCCGGGCAGG GCTTGTACGT GACGACGCAT
CCCAAGCAGG CCAACAGCCA GCCGCTTGAC GTGAGCGAAG CGCAGCAGCA GCTCGCCAAT
GCGGACGGGC TGATCGAGTC GATGTCGCAG GTCAGCGAGA CGCACCAGGC GGAGAGTCTC
GACACCGGTC ACGATGCGCT GAAGCAATTC ACCGATGCGA CGCGGAACAG CGTGCCGGGT
TCGACGGCGG GCGGTGGCCG GACCGCCGGC GGCGGGACGG GGAACGCGAA TGCGTTCAAG
GAGCCGGTGA TGCTGTTCGC GAGCCCGGCG GGGATCGGGG TGGCGTCGCA GCAGTCGGTG
CATCTGGCGA GCGATCGGCA GACCAATATC GTCAGCGGGG AAAGCACGTT CATCACCAGC
GGGAAGTCGC TGATCGCCGG CATCCGGGAT CGCATCAGCC TGTTCGCGCA GAACGCGGGT
ATGAAGCTAT TTGCGGCGAA GGGCAAGGTC GAGGTCCAGG CGCACGCGGA CAACATCGAA
CTTACCGCGC AGAAGACCGT GAAGATGATG GCGGCGACCG AGGCCGTCGA CGTGGCCGCG
AAGCAGGAGA TCCTGCTGAC GTCGGGCGGC GCGTATATCC GGATCAAGGG CGGCAACATC
GAGATTCACG CGCCGGGGAA GATTGATTTC AAGGGGGGAC AGCATCAGTT CAGCGGTTCG
GCGAGCATGC AGTATCCGCT GCCCGCGATG CCGGGCGGCA CGTGCAAGCA ATGCGTGCTG
AATGCGCATA GCGGTCGGGA ATCGATGGTC GAGGCGGATT GA
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| Protein sequence | MNVTELAQAI RGGLIQRDRL LKTDIPSLPS NALVPRRAVT RSELGRDFGV VLDLVSTASD
IELKMLIAQP ITLWIQQADK SYLPINGYIH TARRLGADGG LSSYQLRFAS WMHFLKFRSD
MRYWQDKSVD AILADVFDNH PQAKGQYQFA LSKPLPSRSY CRQSETDWNF VHRLMEDEGL
FGFWRHSEDG KAHTLVITDD LHAIDALSPN AVTFDRSGTG TETAGLTQWA ASRTLQSTQH
TTRTFDYKSP SSAGSPNGTT LPTKAGQGDL PGQAEIYEYT GAYTYPGQAR GEHLSKIRLE
EWESRAKRFF GAGGVRAIDA GRRFTLTGHP EHDRDSAGDR EFAAIAVARY IENNLPISDH
EATFPHSLQD QLAQVKACHA DAAAFEVGHD DGSAGFYLVE VEAQRASVPY RSPFEHRKPA
MQLETAVVVG PKGEEVYTDE LNRIKVMFVW DRQSEGRENA SCWMRVVQSD TGGGYGAVHI
PRVGEEVLIG YIGGDCDRPI VMHRVYNGAV KPQWHSDGIL SGFRSKEYAG SGHNEMVLDD
ATGQNRARLF SSSANSLLHL GYLIEQNGNT RGAYLGSGFD LRTDAYGAMR AGQGLYVTTH
PKQANSQPLD VSEAQQQLAN ADGLIESMSQ VSETHQAESL DTGHDALKQF TDATRNSVPG
STAGGGRTAG GGTGNANAFK EPVMLFASPA GIGVASQQSV HLASDRQTNI VSGESTFITS
GKSLIAGIRD RISLFAQNAG MKLFAAKGKV EVQAHADNIE LTAQKTVKMM AATEAVDVAA
KQEILLTSGG AYIRIKGGNI EIHAPGKIDF KGGQHQFSGS ASMQYPLPAM PGGTCKQCVL
NAHSGRESMV EAD
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