| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0406 |
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| Symbol | |
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| ID | 6178366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 453673 |
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| End bp | 455508 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641680148 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001807119 |
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| Protein GI | 172059467 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.65912 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGAAT TGCTGCCGTA TTACGAGCGC GAATTATCGT TTTTGCGGCG CTATTCGCGA
GATTTCGCCG AACGCTATCC GAAGATCGCC GCGCGGCTCG CGTTGTCCGG CGAGCACTGC
GAGGATCCGC ACGTCGAGCG GATGATCGAG TCGTTCGCGC TGCTGGGCGC GCGCATCAAC
AAGAAGCTCG ACGACGACTA CCCGGAATTC ACCGAAGCGC TGCTGGAAGT GCTGTATCCG
CACTACCTGC GGCCGTTCCC GTCGTGCTCG ATCGCGCAAT TCACGCCGGC TTCGCCCGGC
CAGCAGACCG AACCGGTCGT GATCGACCGC GGCACCGAGC TGAAGAGCCG TCCGATCCGC
GGCGTGCAGT GCCGGTTCCG CACCGCGTAC GACGTGACGC TCGCGCCGAT CCGCATTTCG
GAGGCGCGCT ACATGCCGGT CGCGCTCGCG CCGAGCGCGA CGGTGCTGCC GTCCAACGCG
ACGGGCGTGA TCTCGATCAC GTTCGAATCG CTTGCCGCGC AGCTCGATCT CGGCGCGCTG
AAGCTGCCGA CGCTGCGCGC GCACCTGCAC GGCGAACAGT CGTTCGTCGC CGCGCTGACC
GACTGCCTGT TCGTCAACGT GCTCGGCGCG TATGTCGAGC CCGAGCGCAA CGGCCGCTGG
ACCGCGCTGC GCAAGCTGCC GATCGCGCAC GCCGGCTTCG ACGAGGACGA CGCGCTGATC
GACTACCCGG CGAAGTCGCA CCCCGCCTAT CGCCTGCTCA CCGAATACTT CGCATTCCCC
GACAAGTTCG ATTTCGTCGA TTTCGACGTC GCGGCGATCG CGCGCGCGGC GGGCCGCTGC
CAGCGCGCGA CGCTGCATCT GGTGCTGCAG GACGTGCGCA GCGATTCGCA CGTCGCGCGG
CTGCTCGAGC TGCTGACGGC CAGCCATTTC CGGCTGTTCT GCACGCCGAT CGTCAACCTG
TTCCGCCAGC ACGGCGAGCC GATCCGCATC ACGCACCGCG CTGTGTCGTA CCCGGTGATC
GCCGAAGCGC GCCGGGCGTT CGCGTACGAG GTGTATTCGA TCGATTCGGT GAAGCTCGTC
CGGCAGCAGG CGCACGAGGA ATCGGTGATC GAGTTCCGGC CGTTCTATTC GCTGCATCAC
GGCGAATCGG CGCGGATCGG TCATTACTGG TTCGCGCGCC GCAACGACTG GGTCGCGCAG
AAAAGCCCCG GATACGAAAC GGAGATCTCG ATCGTCGACA TCGACTTCGA GCCGACGTCG
CCGCAGACCG ACACGCTGAG CCTCGACCTC ACCTGCACGA ACCGCGATCT GCCGTCGATG
CTCGCGTTCG GCCTCGAAGG CGGCGACCTG TTCCAGGAAG GCGGCGCGCA GACGAGCGGC
ATCTCGCTGC TGCGGCGCCC GACCCAGAGC GTGCGTTTCG AGCGCGGCCG CGCCGCGCAC
TGGCGGCTCG TGTCGCACCT CGCGCTGAAC CACGTGTCGC TGGTCGCGCA CGGGCTCGCG
CCGCTCAAGG AAATGCTGAC GCTGTACGAC CTGCGGCGCA CCGCCGTGTC GATGCGCCAG
ATCGACGGCC TCGTCGGCGT CGAGCAGCGC GGCGCCGTGC AGTGGCTGCC CGGCAAGCCG
TTCGCGACCT TCGTGCGCGG CATCGAGATC CGGCTGACGA TCGACGAGGA GCACTTCGTC
GGCGCGAGCC TCGCGTCGTT CGTGCGCGTG CTCGACAGCT TCTTCGGGCT GTATGTCCAC
CTCAACAGTT TCGTTCAACT AGTCGTGGTG TCGAAGCGCA CCGGCGAGGA GATCATCCGA
TGCAAGCCCC GAACCGGCGA ATCGATCCTG GCGTAG
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| Protein sequence | MEELLPYYER ELSFLRRYSR DFAERYPKIA ARLALSGEHC EDPHVERMIE SFALLGARIN
KKLDDDYPEF TEALLEVLYP HYLRPFPSCS IAQFTPASPG QQTEPVVIDR GTELKSRPIR
GVQCRFRTAY DVTLAPIRIS EARYMPVALA PSATVLPSNA TGVISITFES LAAQLDLGAL
KLPTLRAHLH GEQSFVAALT DCLFVNVLGA YVEPERNGRW TALRKLPIAH AGFDEDDALI
DYPAKSHPAY RLLTEYFAFP DKFDFVDFDV AAIARAAGRC QRATLHLVLQ DVRSDSHVAR
LLELLTASHF RLFCTPIVNL FRQHGEPIRI THRAVSYPVI AEARRAFAYE VYSIDSVKLV
RQQAHEESVI EFRPFYSLHH GESARIGHYW FARRNDWVAQ KSPGYETEIS IVDIDFEPTS
PQTDTLSLDL TCTNRDLPSM LAFGLEGGDL FQEGGAQTSG ISLLRRPTQS VRFERGRAAH
WRLVSHLALN HVSLVAHGLA PLKEMLTLYD LRRTAVSMRQ IDGLVGVEQR GAVQWLPGKP
FATFVRGIEI RLTIDEEHFV GASLASFVRV LDSFFGLYVH LNSFVQLVVV SKRTGEEIIR
CKPRTGESIL A
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