| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0404 |
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| Symbol | |
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| ID | 6178299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 452544 |
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| End bp | 453047 |
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| Gene Length | 504 bp |
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| Protein Length | 167 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641680146 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001807117 |
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| Protein GI | 172059465 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.000425347 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTACATA TGCACTTGCA GTTTGGTAGT CCCGCGGTGA AGGGCGAGTC CGCGGACAAG
GACCACCAGG GCTGGATCGA GCTGAAATCG TGGGATCACT CGATCGTTCA ACCGCGTTCG
GCAACCGCAT CGACCGCTGG CGGTCACACG ATGACGCGTT GCGAGCACGG CGACATGATT
TTCACGAAGG AAATCGATTC GTCGAGCCCG CTGCTGTACC AACACGCTTC GGGCGGCACC
ACGTTCGACG AGGTGACGGT CCATTTCTCG CGCGCTGACG GTGAAGGCAA GCGCGTGCAG
TATCTGGAAG TCAAGCTCAA GTACGTGATC ATCTCGAGCA TCGCCCCGAG CGTTCGCGAG
GAAGGTCTGC CGCTCGAGAC GTTCTCGCTG AAGTACGCAG CTGTGCAGTG GAAGCAAACC
CAGCAGAAGA TCGGCGGCAA CCAGGGCGGC AACACGCAGG GCGCCTGGAG TCTGACGAAG
AACGACAAGA CCTACGCGGT CTAA
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| Protein sequence | MLHMHLQFGS PAVKGESADK DHQGWIELKS WDHSIVQPRS ATASTAGGHT MTRCEHGDMI
FTKEIDSSSP LLYQHASGGT TFDEVTVHFS RADGEGKRVQ YLEVKLKYVI ISSIAPSVRE
EGLPLETFSL KYAAVQWKQT QQKIGGNQGG NTQGAWSLTK NDKTYAV
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