| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0384 |
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| Symbol | |
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| ID | 6176793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 433585 |
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| End bp | 438237 |
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| Gene Length | 4653 bp |
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| Protein Length | 1550 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641680128 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001807099 |
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| Protein GI | 172059447 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.223676 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAAC AACTTCCACC GGGCGCCGAG AAGGAACAGG CCGTTACCTG GCTCAGCGAT
GTTTCCCCCA AGGATGTCGC CGCGGGCGGC AACCGCTTTG ATGCGTGGTT GCGACGGATC
AGCGGCAACC ACATCACGTT CGAGGACGTG AAGACCTTTG CCGGCGCGGT GCCGATCGTC
GGCAACATCA TGGCGATGGT CGACGCGCTC GGCGATATCG CGGAGATCGT CGAGAAGCGC
GGCGGTCAGG TGCTCGACTA CATGAGCCTC GCGATCAACC TGCTCGGCAT CATTCCGATT
CCGCCGACGC TCGCGCCGTT CCGGATGTCG GCGCGCCCGC TGCTCGCGCT CGTTCGTCAC
GAATTGCTGG CGACGCGCAG CAATCTCGGC GCGGCGATCA TCTCCGTGCT GGTCACGCAT
ATCAACGCGA CGTGCGCGAC CGAGATCGAG GATTTTCTTA ACAAGCTGAA GGCCGGCCTC
GTCGAGCTGC TCGACGGATG CGCATCGAAA GCCGAGGAGA TCATGCTCGC GTTGGCGACG
GGCATGGACA AGGCGCTGCA CGGGCAGCTC TTCGACGCCA ACGCCAATCT GAGGCGCCAG
CAGCAGCTCG CCAAAAAGCT GGCGGACGCC CGGCCGTGGT ACAGCCCGAG CCGCGTCGGC
GACGGCATCC AGTTCGCGTA CGAAGGCACC AAGGCGCTCG GGAAGAAGGC CGTGAACAAG
ACGGCGGGCA CCATGGCGGC GCTCGCGCCC GATGCATGGC TCGAGCCGTT TCGCGGCACG
GTGACGTTCC TGCGGACCGA GGCGCCGAAG ATCGCGACGT CGATCCGTTC GCTCGCCGGC
AGCGAAGAAG GCAAGATGAT GTGGCTGGTC TTGCAGCTGA TCGAGGCTGT CGGGCGCGTG
AAGGCACGCG CGAAGCTCCA TGAGCAGAGC GCGGACGTCA AGGCGGCAGG GACGAGCCAG
GCGAAGAAGA CGCGCGGCCA AGAGGGGCTG GAGAAAACCA ACGGGCAAGC ACCGTCCGAA
GGGCCGGGGA AGAGCGCGTG CAAGTCTTGC GGCGTCGGGG CATCGCCCGC ATCCATCGAT
TTCGCATTCG GCGACGAAAC GTTCTCGCAC GTGGATTTCG ACCTACCGGG CGCGCTGCCG
CTCGTATGGG AGCGGACGTA CCGTTCCCGG CTTTCCGCGT ATGACGACGG CGAACTGGGT
GCGCGATGGA TCACCCCCTA TACGACGCGC ATCGACATCA GGAACGGTCA GTGGATCTAT
CGCGATGCGG AAGGGCGCAG CATCGAGTAT CCGGCGCTTG CGGCCGGCGC GGTGCACGAC
GACCTGTCGG AGAACCTGAC GCTGTCGCGA CTCGACGATA CGTGGGTGAC GATCGCATAC
GGTCATGCCG TGCTGCATGT GTATGAGCGC CGCGGCGATG CGTTCCGACT CGCGATGCAG
AAAGACCGCG CCGGAAATAC GATCACGCTC GACTACGATG CGCTTGATCG CCTGGCGCGC
CTCGTCGACG CAAGCGGCAA TGTGCTCGCG TTCGAGCACG ACAAGCATGG CCGGATCCTG
CAGATCGAGC ACGTGCTCAA GGACGGTGCG CGCCGTACGC TGGCGAGCTA CGAATACGAT
GCGGCAGGCG ACCTCGTGCG CGCGGTCGAT CGGCACGGCA ATGCGCGGAC GTATCAATAT
CGCCGTCACC TTGTGACGCG CTACACCGAC CGCACCGGCC GCGGGATGAC GCTCGAATGG
GATGGCGCGG ATGCCGACGA CAACGCGGAC GCGAAATGTA TCCGTGAATA TGCCGATGAC
GGCAGCCTCG ATCTCCGGCT CGCGTGGAAC CCGAATATCC GCCTGACCTA TGTGACCGAC
GCGCTCGGTC AGATGACGCG TTACTACTTC AATATCCATG GCTACGTGTA TCGGATCGTG
TATCCGGACG GTAATCAGGA GTGGTTCCGG CGCGATGCGC ATCACAACCT CGTGCTGCAT
ATCCGTCAGG ATGGCAGCAT CGAGCGGCGG GAATACGACG CGCGCGGCAA TCTGGTCGAG
CATGAGCTTG CGGACGGCAG CGTCGTCGCG ATGGCATACG ATGACAAGGA TCAGATGATC
CGGCTCGTCG ATCCGAACGG ACACGTGTGG CAGCGCAAGT ACGACGATGC GGGCAACCTC
GTCGAGGAGA TCGATCCGCT CGAGCACGCG ACGAAGTACG AATACAACGA CAAGGGATTG
CCGACGCAGA TCACCGATGC GAAGGGCGGC TCGAAGGCGC TGGAGTACAA CGAGGCGGGC
CAGGTCACCA GCTATACCGA CTGCTCCGGA AAGAAGACGG AGTGGCGGTA CGACGATATT
GGCCGCGTGA TCGAGGCCAA GGACGCATCC GGTGGCGTGG TTGCGTACGG TTATGGTGCG
AATGGCCAAT TGACGGAGAT TCGCTCGCCG GCTGGTGTCG AACACGTGCA GTACGACGCC
GAAGGGCGAA TGCTCAGGCA TACGGATCAA CTCAATCGAT CGACGCGATA TGGCTACGAT
GCGGTCGGCC GCATTGCGAG CCGCGCGGAT GCGCTCGGGC AGACGATTGC GTATCGCTAC
GACCGTCTCG GCCGGTTGAG TGCGCTGACC GATGCCAACT TCGCGACGTA CCAGTTCCAC
TATGATCCGG CCGGGCGGCT GATCGAGGAA GTTGCGTTCG ACAGCAAGTC GACGCGCTAT
CAATACGATC CGGACAGCGG CCGCCTTGTT TCGGTCGACG AAGCGGGTTG CGTGACGTCG
ATCGACGTCG ACGCAAACGG CCGTCTGCTG AAGCGGGTCG CGGGGGAGAG CGAGGAGCGG
TTTGCCTACG ACCCGAGCGG CCGGCTGATC GACGCGGCGA ATCGATACAG CCGCGTGCAG
TTCTTCTTCG ATCCGGTCGG CAATCTGGTG CGCGAGCATC ACGCGTACGA TTTGTTCGGC
GAACGACGCA GCTACGTGTG GCATCACGAA TACGACGAAC TCGGCAACCG GCGACGGACC
GTGCGGCCGG ATGGGCATGC CGTCGACTGG CTGATGTACG GTTCCGGCCA CGTGCACGGG
ATGCTGCTCG ATGGCGAGGA GCGCGTGCAG TTCGAGCGCG ATGATCTTCA TCGCGAGACG
GTGCGCGTGC TGTCGAGCAA GATCGGTCAG CGCACGCATT ACGATCCGGC GGGGCGCGTG
CTGCAGCAGA CGATTCAACG GTCGACATCG CCCGCGCCGC TTGCCGAGCG GCGGTATCGC
TATGACGCGG CGGGGCAGTT GTCGCGGATC GAGGATAGCC GCAAGGGCGG GATCGACTAT
CGATACGATC CGGTCGGACG GTTGATCGAG GCGATCAGTC CGGTCGCGAA GGAACGGTTC
GCGTTCGATC CGGCGAGCAA CATCATCGAT CCGGTGCGGA CCATGGAGAC GCCCGCCTCT
CGTCCGAGCC CGGTGCGGCC GGAAAGCACG TTGCCGGTCG AGGTGCCGAA GGTGCTGGGC
AACCTGCTGA AGGCGTATTC GGGGATGCAC TTCGAGTACG ACGCGCGCGG GAATCTGGTG
CGCAAGCGTA CGCCGGCGGG TGAGCAGGAA TACGAGTGGG ACGAGTTCAA TCGCTTGTTG
TCGGCGCGGG TTGCGGAGAC GTCGCGGCAG AGTCAGGCGC GGTATTTCTA TGACGCGTTC
GGTCGGCGCA TCGCGAAGGA GGTGAACGGC GAGCGGACGG TGTTCGGGTG GGATGGGGAC
ACGCTGGCGT ACGAGAGCGA TGGCGAGCGG GGCACGCACT ATATCTACGA GCCGGGGACG
TTCGTGCCGC TGGCGCAGTA TGTGGCGGGG CCGGTCGAGG GGATCGCGAC GCCGGAGTGG
AAGAGTACCG ATCGGTATGT GCCGGAGGAG GATCCGCTGC AGAAGGTGCC GGAGCGGCGG
GGTGATGCGG CGGTGTTCTA TTACCACTGC GATCAGATTG GTACGCCGCA GCTGCTGACT
GACGACGATG GTGACGTGGT GTGGGAAGCG TCGTACAAGG CTTGGGGGGA AGCGCGGGAG
GTGATTGCGC GGGCGTCGAA GGCGGCGGGG ATCGTGGCGA AGAATCGGCT ACGGTTCCAG
GGGCAGCAAG TTGATGCGGA AACGGGACTG TACTATAACC GACACAGGTA CTATGACCCG
AACAGCGGCC GATTCGTCAG CAAAGACCCA ATCGGGCTAA TGGGCGGGAT AAACGTATAT
ACCTATGTCG CAAACCCGAC TGGATGGATT GACCCCTTAG GACTTGAAGG TACCCCATGT
GATGGTTTTG GTGCGTTGGC TGCGCGCCGG AAGTCGCTTG GACTACCTGC TGCAGGCTCC
GAAGGAGACA CGTCGACGTT GTCTTTGCTG AGGATAAATG GACAAAGCTT TGAGGGTATC
AACTCAAGCG ACCAAAATCC AAAGACCCCG ATCACTCTTG ATCGCGTTAA TGCTCAGACA
AAGACTCATG CCGAGGCTGA AGCAGTGCAA AAGGCTGTAA ATGCGGGTAT GGCTGGAAAG
GCGTCGCACG CCGAAATGTG GGTGGACCGT GACCCCTGCC GTGCGTGTGG TATTCCGGGA
GCAGGCGGAC TTCGGTCACT AGCTCGAAAT CTGGGTTGCC CCATCACAGT ACATTCACCC
AGCGGAACCC AAGTGTACAC ACCGACCAAG TGA
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| Protein sequence | MAQQLPPGAE KEQAVTWLSD VSPKDVAAGG NRFDAWLRRI SGNHITFEDV KTFAGAVPIV
GNIMAMVDAL GDIAEIVEKR GGQVLDYMSL AINLLGIIPI PPTLAPFRMS ARPLLALVRH
ELLATRSNLG AAIISVLVTH INATCATEIE DFLNKLKAGL VELLDGCASK AEEIMLALAT
GMDKALHGQL FDANANLRRQ QQLAKKLADA RPWYSPSRVG DGIQFAYEGT KALGKKAVNK
TAGTMAALAP DAWLEPFRGT VTFLRTEAPK IATSIRSLAG SEEGKMMWLV LQLIEAVGRV
KARAKLHEQS ADVKAAGTSQ AKKTRGQEGL EKTNGQAPSE GPGKSACKSC GVGASPASID
FAFGDETFSH VDFDLPGALP LVWERTYRSR LSAYDDGELG ARWITPYTTR IDIRNGQWIY
RDAEGRSIEY PALAAGAVHD DLSENLTLSR LDDTWVTIAY GHAVLHVYER RGDAFRLAMQ
KDRAGNTITL DYDALDRLAR LVDASGNVLA FEHDKHGRIL QIEHVLKDGA RRTLASYEYD
AAGDLVRAVD RHGNARTYQY RRHLVTRYTD RTGRGMTLEW DGADADDNAD AKCIREYADD
GSLDLRLAWN PNIRLTYVTD ALGQMTRYYF NIHGYVYRIV YPDGNQEWFR RDAHHNLVLH
IRQDGSIERR EYDARGNLVE HELADGSVVA MAYDDKDQMI RLVDPNGHVW QRKYDDAGNL
VEEIDPLEHA TKYEYNDKGL PTQITDAKGG SKALEYNEAG QVTSYTDCSG KKTEWRYDDI
GRVIEAKDAS GGVVAYGYGA NGQLTEIRSP AGVEHVQYDA EGRMLRHTDQ LNRSTRYGYD
AVGRIASRAD ALGQTIAYRY DRLGRLSALT DANFATYQFH YDPAGRLIEE VAFDSKSTRY
QYDPDSGRLV SVDEAGCVTS IDVDANGRLL KRVAGESEER FAYDPSGRLI DAANRYSRVQ
FFFDPVGNLV REHHAYDLFG ERRSYVWHHE YDELGNRRRT VRPDGHAVDW LMYGSGHVHG
MLLDGEERVQ FERDDLHRET VRVLSSKIGQ RTHYDPAGRV LQQTIQRSTS PAPLAERRYR
YDAAGQLSRI EDSRKGGIDY RYDPVGRLIE AISPVAKERF AFDPASNIID PVRTMETPAS
RPSPVRPEST LPVEVPKVLG NLLKAYSGMH FEYDARGNLV RKRTPAGEQE YEWDEFNRLL
SARVAETSRQ SQARYFYDAF GRRIAKEVNG ERTVFGWDGD TLAYESDGER GTHYIYEPGT
FVPLAQYVAG PVEGIATPEW KSTDRYVPEE DPLQKVPERR GDAAVFYYHC DQIGTPQLLT
DDDGDVVWEA SYKAWGEARE VIARASKAAG IVAKNRLRFQ GQQVDAETGL YYNRHRYYDP
NSGRFVSKDP IGLMGGINVY TYVANPTGWI DPLGLEGTPC DGFGALAARR KSLGLPAAGS
EGDTSTLSLL RINGQSFEGI NSSDQNPKTP ITLDRVNAQT KTHAEAEAVQ KAVNAGMAGK
ASHAEMWVDR DPCRACGIPG AGGLRSLARN LGCPITVHSP SGTQVYTPTK
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