| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0383 |
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| Symbol | |
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| ID | 6176804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 430361 |
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| End bp | 433534 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641680127 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001807098 |
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| Protein GI | 172059446 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATGC AGAATACGAT TGCCGCATTG CGCGGCGGGT TGCTTCAGCA GGACCGGCTG
CTGAAGCTCG ATACGCCATT GGGGGCCAAC GTGCTGACCG TGCAGCGTGC GGTCGGCCGT
TCGCGCATCG GGCGCGCATA CGAATTCACG CTCGACGTGC TGTCGGCCGA TGGTGATCTG
GAACTCAAAA AACTGATCGC GCAGCCCGTC ACGTTGTGGA TCCAGCAAGG CGATCGCAGC
TACCGGCCGG TCAACGGCTA CGTCCATACC GCGCGCCGCC TCGGCGCCGA CGGCGGGCTC
ACGACCTATC AGCTCACGTT CGCCGATTTC ACCCATTTCC TGAAGTTTCG TCGCGACCAG
CGCCTCTGGA ACGACACGAG CGTCGATCAG ATCATCAGCG ATGTGCTGAA TCAGCATCCG
CAGGCGCAGG GGCATTTTCG GTTCGCGCTG TCGAAGCCGC TGCCGAGCCG GTCATACACG
CGTCAGCACG ATACCGACTG GCATTTCGTG CACCGGCTGA TGGAAAGCGA AGGCCTCTAC
AGCACGTGGC AGCAGGCCGA CGACGGCAAG TCGCATACGC TCGTGATCAC CGACAACCTG
CAAGCGTTCG CGTCGCTGTC GCCGGAAACC CTGCGCTTCT ATCGTGGCGG CGCGGCGAGC
GAAGCCGACG CGTTCACGCA ATGGTCGGGC ACGCGCACGC TGCAGAGCGT GACGCGGACG
ACGCGCACGT TCGACTACAA GAATCCATCG CAACCGTCGA ACCCGAAGGG CACGACGCTG
CCGACGATGG GTGGCCAGGG CGAATTGCCC GATCAGCTCG AGGTCTACGA GTACACCGGG
GCGTACACCT ATCTGGACCA GACGCGCGGC GACCATCTGA CGAAGATCCA CATGGAGGAA
TGGGAGTCGC AGGCGAAGCG CTTCCATGGC GCGGGCGGCG TGCGCGCGAT CGATGCCGGC
CGGCGCTTCG TGCTGTCGGA TCATCCCGAG CACGATCGCG ATCCGGCAGA CCAGCGCGAG
TTCGCAGCGA TCGGTGTCGA GTGGTGGATC GAGAACAACT TGCCCGTCGC GAGCAGCAGC
GCGGACTTTC CGTACAGCCT GCGCGAAGCG TTGACGCAAG CGCAGGAGGG CTACGGTGCC
GATCCCGCGT TTCGCGTGCC GCATGACGAT GGCTCGGTCG GTTTCTACCT CGTCGAAGTC
GAAGCGCAGC GTGTGAGCGT GCCGTATCGC AGCCCGTTCG AGCACGAGAA GCCGAAGATG
CATCTCGAGA CGGCGATCGT CGTCGGGCCG CAGGGCGAGG AAGTCTATAC CGACGCGTTG
AACCGGATCC GCGTGCAGTT CGTGTGGGAC CGTCTGAACC CGGGCAACGA GAACGCGTCG
TGCTGGGTGC GCGTGGTGCA GTCGGATACC GGTGGCGGCT ACGGCGGCGT GCATGTGCCG
CGCATCGGCG AGGAAGTGCT GATCGACTAT GTCGGTGGCG ATTGCGACCG GCCGCTTGCG
GTCGGGCGCG TGTACAACGG CGCGAACCAG CCGCAGTGGC ACTCCGACGG GATTCTGTCC
GGATACCGGT CGAAAGAGTA TTCGGGCGGC GGCTACAACC AGCTCGTGAT GGACGACGCG
ACCGGGCAGA ACCGCGTGCA ACTGATGAGC AGCAGCGCGA ACAGCCTGCT GCATCTGGGC
TACATCATCG ACCAGAACGG CAATTCGCGC GGCTCGTATC TGGGCAGCGG GTTCGACCTG
CGCTCGGATG CGTATGGCGC GGTGCGGGCG AGCCAGGGCC TGTACGTCAC CACCCATCCG
AAGGCGCCAA ACAGCCAGCC GCTCGACGTG AAGGAAGCGC AGCAGCAGCT CGTGACGGGC
GAGAGCCTGG TCGAGGCGAT GTCGGGCGTG AGCGAGCAGC ATCAGGCGGA GAGCCTGAAG
GACGCGCAAG ACACGATGCG CGCGTTCACC GACGCAACGC AGAACAACGT ATCGGGCAAC
ACGTCCGGCG GGCGAACGGC AGACGGCGGC ACGGGCAGCG CGAACGCATT CAAGGAGCCG
GTGATGCTGT TCGGCAGCCC GTCAGGGATC GGGATGTCGA CGCAGCAGTC GCTGCACATG
GTCGCGAACG ATCACGTGAA CGTCGCGAGC GGACAGAGCG TACATGTCGC GGCGGGCAAG
TCGCTGATCG GCAGCATCGG GCAGAAGCTG AGCCTGTTCG TGCAGAACGC GGGGATGAAG
CTGTTCGCGG GCAAGGGCAA AGTCGAGATC CAGGCGCAGT CGGACAACGT CGAGGTGACC
GCGCAGAAGG CTGTGAAGGT TGTGTCCGCA ACCGACCGCA TCGAGATCGC GGCCGATCAA
GGGATTCTGT TGACCAGCGG CGGCGGGTAT ATCCGCATCC AGGGCGGCAA CATCGAGATT
CATACGCCGG GCGCGGTGGA CGTGAAGGGC GCGTCGCATA CGTTCGCGGG GCCGGCGAGC
ATGGGTTATC CGTTGCCGAG CCCGCGGCCG GATCAGCCGG GGCAGCTCGA GCTGTTTCAC
AAGTACGTGA ACGGCGAGGC CGTGAAGGGT GGGTTGTTCA CGGTGAAAGA CGTGAACGGC
GCCGTGCTGA AGAAGGGCGC GCTCGACAAC AGCGGCTATA CGGTGGTGAG CGGCTTGCCG
CCCGGCGCGG TACGCGTCGA GTTCGGAAAG GACCCGCGCG AGTCGGACCA GCCGGCGAAT
TACTTCAAGC AGGCGAAGTG GCCGGCAGAG CCGGTCGAAC CGTCGCCGGA AGCCGCGCAG
GCAGCGGCGA GCGGTCAGCT CGCGAGCCAG TTGCAGGGAA TGGCGCCCGC GGCGACCACG
GCGGCGATGG GGCTCGTGAG TGGCGGCAGC GCGGGCGCTG CGCTCGGCGG GCTCGCGAGT
TCCGCATTGC CGGCTGCCGC GAGTGCGCTC GGTGGAGCGG GCGCCGCGTC GGCGTTGCAG
ACGGCTTCCA GCCTGAGCGG TGCAGCGAAG CAGGTGGCCG GGATGGTGCA GGCCGCACGT
CAGGGTGGGC TTGCGGCGCT GGCCGCGCCG GCCGCGAATG CCGCGTCCGG AGCGCTGCAG
GGAGCGTTGC CCGGCGTCGC TGGAATCGCG GGCAAGGGCG CCACGACGGT GGCGTCAGCG
GCGGGCGGCA TGAAGCTGCC GACCCCCGGG TTTGGCGGAC CGCTGAAATC CTGA
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| Protein sequence | MNMQNTIAAL RGGLLQQDRL LKLDTPLGAN VLTVQRAVGR SRIGRAYEFT LDVLSADGDL
ELKKLIAQPV TLWIQQGDRS YRPVNGYVHT ARRLGADGGL TTYQLTFADF THFLKFRRDQ
RLWNDTSVDQ IISDVLNQHP QAQGHFRFAL SKPLPSRSYT RQHDTDWHFV HRLMESEGLY
STWQQADDGK SHTLVITDNL QAFASLSPET LRFYRGGAAS EADAFTQWSG TRTLQSVTRT
TRTFDYKNPS QPSNPKGTTL PTMGGQGELP DQLEVYEYTG AYTYLDQTRG DHLTKIHMEE
WESQAKRFHG AGGVRAIDAG RRFVLSDHPE HDRDPADQRE FAAIGVEWWI ENNLPVASSS
ADFPYSLREA LTQAQEGYGA DPAFRVPHDD GSVGFYLVEV EAQRVSVPYR SPFEHEKPKM
HLETAIVVGP QGEEVYTDAL NRIRVQFVWD RLNPGNENAS CWVRVVQSDT GGGYGGVHVP
RIGEEVLIDY VGGDCDRPLA VGRVYNGANQ PQWHSDGILS GYRSKEYSGG GYNQLVMDDA
TGQNRVQLMS SSANSLLHLG YIIDQNGNSR GSYLGSGFDL RSDAYGAVRA SQGLYVTTHP
KAPNSQPLDV KEAQQQLVTG ESLVEAMSGV SEQHQAESLK DAQDTMRAFT DATQNNVSGN
TSGGRTADGG TGSANAFKEP VMLFGSPSGI GMSTQQSLHM VANDHVNVAS GQSVHVAAGK
SLIGSIGQKL SLFVQNAGMK LFAGKGKVEI QAQSDNVEVT AQKAVKVVSA TDRIEIAADQ
GILLTSGGGY IRIQGGNIEI HTPGAVDVKG ASHTFAGPAS MGYPLPSPRP DQPGQLELFH
KYVNGEAVKG GLFTVKDVNG AVLKKGALDN SGYTVVSGLP PGAVRVEFGK DPRESDQPAN
YFKQAKWPAE PVEPSPEAAQ AAASGQLASQ LQGMAPAATT AAMGLVSGGS AGAALGGLAS
SALPAAASAL GGAGAASALQ TASSLSGAAK QVAGMVQAAR QGGLAALAAP AANAASGALQ
GALPGVAGIA GKGATTVASA AGGMKLPTPG FGGPLKS
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